Part of scaffold_3099 (Scaffold)

For more information consult the page for scaffold_3099 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM42 ENSTTRG00000010723 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 42

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010167, Bottlenosed dolphin)

Protein Percentage 91.08%
cDNA percentage 94.72%
Ka/Ks Ratio 0.29995 (Ka = 0.04, Ks = 0.1332)

TRIM42 ENSBTAG00000018346 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024411, Cow)

Protein Percentage 94.97%
cDNA percentage 93.39%
Ka/Ks Ratio 0.06885 (Ka = 0.0225, Ks = 0.3268)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2088 bp    Location:19983..5596   Strand:-
>bmy_21596
ATGGAGACTGCCATGTGTGTTTGCTCTCCATGTTGTACATGGCAGAGGTGTTGTCCCCGCTTATGCTCGTGTCTGTGCTGCAAGTTCCTCTTCACCTCGGAGCGGAACTGCACCTGCTTTCCCTGCCCTTACAAGGATGAGCGCGACTGCCAGTGCTGCCACTGCACCTGCTCCGAGAACCCCAACTGTCACTGGTGCTGCTGTTCCTGGGCCAATGACCCCGCCTGTAAGTGCTGCTGCACAGCCAGCAGCAACCTCAAGTGCCACTACTACGAGAGCCGCTGCTGCCGCAACGCCACCATCACGTTCCGCAAGGGCCGCCTCCAGAGCATCCGTACCTCCTCCAAGACGGCCCTGCGCTTTGGGAGCAGCGACACGCAGCTGGATGAGGTGAAGATGATGCCTGCGAACAGCAGCCTGGTCAGCCACCTGTCGTGCCCCATCTGCAGCCGGCTGCGCCTGCACTCCTTCATGCTACCCTGCCACCACAGCCTGTGCGAGAAGTGCCTGCGGCAGCTGCAGAAGCACGCCGAGGTCACCGAGAACTTCTTCATCCTCATCTGCCCCGTGTGCGACCGCTCGCACTGCATGCCCTACAGCCACAAGATGCAGCTGCCCGAGAACTACCTGCGCGGACGCCTCACCAAGCGCTACATGCAGCAGCATGGCTACCTCAAGTGGCGCTTCGACCGCTCCAGCGGGCCTATCGTCTGCCAGGTCTGCCGCAGCCAGCGCATCGCCTACAAGCGCTGCGTCACCTGCCGCCTCAACCTGTGCAACGAGTGCCTCAAGACCTTCCACTCGGAAGTGACCATGCAGGACCACGTGTTCGTGGACACCAGCACCGAGGACCAGGACGAGAAGATCTGCATCCACCACCCGTCCAGCCGCATCATTGAGTACTGCCGAAACGACGACGAGTTGCTCTGCAGCTTCTGCAAGACTGCCTTACACAATGGCCACGACACCATAAGCCTCATCGATGCCTGCTCCGAGAGGGGTGCCGCGCTCTTCGGCGCTATCGCCAAGTTCAAAGCAGTCCGATATGAAATTGATAATGACCTCATGGAATTCAACATTTTAAAAAACAGCTTTAAAGCTGACAAGGAGGTAAAGCGAAAAGAGATCAGAAATGGATTCCTCAAGCTGCGCAGCATTCTCCAGGAGAAAGAGAAAACCATCATGGAGCAGATAGAGAATCTGGAAGTGTCCAGGCAGAAGGAGATTGAAAAATATGTGTACGTCACCACCATGAAAGTGAATGAAATGGATGGCCTGATYGCCTACTCCAAGGAAGCACTGAAGGAGACAGGCCAAGTGGCGTTTCTGCAGTCAGCCAAGATTCTGGTGGACCAGATCGAGGACGGCATCCAGAGCACCTACAGGCCAGACCCGCAGCTCCGGCTACAYTCCTTTAACTGCATGCCCTTGGACTTTGCTGAGCTCTCCAGTGCCATCCACAAACTCTTCCCCACAGGACCCAAGAAGGTGTGTTCCTCAGGGGACTCCCTGCCATCGCCCTATCCCCTGCACTCAGAAACGATGATTGCCAGGAAGGTCACTTTCAGCACCCACAGCTTCTGCAACCAGCAGATATACCAGCGAAGCTCCTCCTTATTGTCCTTTAATGCCCCCGGCTGTGAGAAGACCAAGATGGGTCTGGAGGCCTATGGGCGAGCCCAGTCAGCTGCACCTGCCAAGCCCACAGACGGCCTCTACACCTACTGGAGTGCAGGGGTAGAAAACCAGCCTGTGCAGAACAGCAGCAGCTTCCACAACTGGTACTCGTTCAATGATAGCTCCCTGAAGACTCCAGGCCCAATTGTTATCTACCAGACTCTGGTGTATCCGAGAGCTGCCAAGGTTTACTGGACATGCCCAACAGAAGACGTGGACTCCTTTGAGATGGAATTCTACGAACTCGTTAATTCCCCTCCTAACAATGTGCAGACAGAGCTCTGTGGACAAATTCGGGACATAATGCAACAGAACCTGGAGCTGCACAACCTGACCCCCAACACCGAGTATCTGTTTAAAGTGAGAGCCATCAACGATAACGGTCCTGGGCAGTGGAGTGACATCTGCAAG

Related Sequences

bmy_21596T0 Protein

Length: 696 aa      View alignments
>bmy_21596T0
METAMCVCSPCCTWQRCCPRLCSCLCCKFLFTSERNCTCFPCPYKDERDCQCCHCTCSENPNCHWCCCSWANDPACKCCCTASSNLKCHYYESRCCRNATITFRKGRLQSIRTSSKTALRFGSSDTQLDEVKMMPANSSLVSHLSCPICSRLRLHSFMLPCHHSLCEKCLRQLQKHAEVTENFFILICPVCDRSHCMPYSHKMQLPENYLRGRLTKRYMQQHGYLKWRFDRSSGPIVCQVCRSQRIAYKRCVTCRLNLCNECLKTFHSEVTMQDHVFVDTSTEDQDEKICIHHPSSRIIEYCRNDDELLCSFCKTALHNGHDTISLIDACSERGAALFGAIAKFKAVRYEIDNDLMEFNILKNSFKADKEVKRKEIRNGFLKLRSILQEKEKTIMEQIENLEVSRQKEIEKYVYVTTMKVNEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEDGIQSTYRPDPQLRLHSFNCMPLDFAELSSAIHKLFPTGPKKVCSSGDSLPSPYPLHSETMIARKVTFSTHSFCNQQIYQRSSSLLSFNAPGCEKTKMGLEAYGRAQSAAPAKPTDGLYTYWSAGVENQPVQNSSSFHNWYSFNDSSLKTPGPIVIYQTLVYPRAAKVYWTCPTEDVDSFEMEFYELVNSPPNNVQTELCGQIRDIMQQNLELHNLTPNTEYLFKVRAINDNGPGQWSDICK