Part of scaffold_3217 (Scaffold)

For more information consult the page for scaffold_3217 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS35 ENSTTRG00000013280 (Bottlenosed dolphin)

Gene Details

vacuolar protein sorting 35 homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012605, Bottlenosed dolphin)

Protein Percentage 99.86%
cDNA percentage 98.73%
Ka/Ks Ratio 0.01281 (Ka = 0.0006, Ks = 0.0482)

VPS35 ENSBTAG00000002493 (Cow)

Gene Details

Vacuolar protein sorting-associated protein 35

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003239, Cow)

Protein Percentage 99.73%
cDNA percentage 97.23%
Ka/Ks Ratio 0.01222 (Ka = 0.0013, Ks = 0.1041)

VPS35  (Minke Whale)

Gene Details

vacuolar protein sorting 35 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU001900, Minke Whale)

Protein Percentage 87.43%
cDNA percentage 90.08%
Ka/Ks Ratio 0.75289 (Ka = 0.1011, Ks = 0.1342)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2208 bp    Location:62457..28731   Strand:-
>bmy_21708
ATGCCTACAACACAGCAGTCACCTCAGGATGAGCAGGAAAAGCTCTTGGATGAAGCCATACAGGCTGTGAAGGTCCAGTCATTCCAGATGAAGAGATGCCTGGACAAAAACAAGCTTATGGATGCTCTGAAACATGCTTCTAATATGCTTGGTGAACTCCGGACTTCTATGTTATCACCAAAGAGCTACTATGAACTTTATATGGCTATTTCTGATGAACTGCACTACTTGGAAGTTTACCTGACAGATGAGTTTGCTAAAGGAAGAAAAGTGGCAGATCTCTATGAACTTGTACAGTATGCTGGAAACATTATCCCAAGGCTTGAAGAAACAACTGGTGATATCAGTGATTCCATGGATTTTGTACTACTCAACTTTGCAGAAATGAACAAGCTCTGGGTTCGAATGCARCATCAGGGACATAGCCGAGATAGAGAAAAAAGAGAACGAGAAAGACAAGAACTAAGAATTTTAGTGGGAACAAATTTGGTGCGCCTCAGTCAGTTGGAAGGTGTAAATGTGGAACGTTACAAACAGATTGTTTTAACTGGCATATTGGAGCAAGTTGTGAATTGCAGGGATGCTTTGGCTCAAGAATATCTCATGGAGTGTATTATTCAGGTTTTCCCTGATGAATTCCACCTTCAAACTTTGAATCCTTTTCTTCGGGCCTGTGCTGAGTTACACCAAAATGTAAATGTGAAAAACATAATCATTGCTTTAATTGATAGATTAGCTTTATTTGCTCACCGTGAAGATGGACCTGGAATTCCAACAGATATTAAACTTTTTGACATATTTTCACAACAGGTGGCTACAGTAATACAGTCTAGACAAGACATGCCTTCGGAGGACGTTGTATCTTTACAAGTCTCTCTCATTAATCTCGCTATGAAGTGTTATCCTGATCGTGTGGACTACGTTGATAAAGTTCTAGAAACAACAGTGGAGATATTTAATAAGCTCAACCTTGAACATATTGCTACCAGTAGTGCAGTTTCAAAGGAGCTCACCAGACTTTTGAAGATACCTGTTGACACTTACAACAATATTTTAACAGTCTTGAAATTAAAACATTTTCACCCACTCTTTGAGTACTTTGACTACGAGTCCAGAAAAAGCATGAGTTGTTACGTGCTTAGTAATGTTCTGGATTTTAACACAGAAATTGTCTCTCAAGACCAGGTGGATTCCATAATGAATTTGGTATCCACGTTGATTCAGGATCAGCCAGATCAACCTGTAGAAGACCCTGACCCAGAGGACTTTGCTGATGAGCAGAGCCTTGTGGGCAGATTCATTCATCTTCTGCGGTCTGAGGACCCTGATCAGCAGTACTTGATTTTAAACACAGCACGAAAACATTTTGGAGCTGGTGGAAATCAACGGATTCGTTTTACACTGCCACCTTTGGTATTTGCAGCTTATCAGCTGGCTTTTCGCTACAAAGAGAATTCTAAAGTGGATGACAAATGGGAAAAGAAATGCCAGAAGATTTTTTCATTTGCTCACCAGACGATCAGTGCTTTGATCAAAGCAGAGCTGGCAGAATTACCCTTAAGACTTTTTCTTCAGGGGGCTCTAGCTGCTGGAGAAATTGGTTTTGAAAATCATGAAACAGTAGCATATGAATTTATGTCCCAGGCATTTTCTTTGTATGAAGATGAAATCAGCGATTCCAAAGCACAGCTGGCTGCCATCACCTTGATCATTGGTACTTTTGAGAGGATGAAGTGCTTCAGTGAAGAAAATCATGAACCCTTGAGGACTCAGTGTGCTCTTGCTGCATCCAAACTTCTGAAGAAACCTGATCAGGGCCGAGCTGTGAGCACCTGTGCACATCTCTTCTGGTCTGGCAGAAACACAGACAAAAATGGGGAGGAGCTTCACGGAGGCAAGAGGGTAATGGAATGCCTAAAGAAAGCTCTAAAAATAGCAAATCAGTGCATGGACCCCTCTCTACAAGTGCAACTTTTTATAGAAATTCTGAACAGATATATCTATTTTTATGAAAAGGAAAATGATGCGGTCACGATTCAGGTTTTGAATCAGCTTATCCAAAAGATTCGAGAAGACCTCCCAAATCTTGAGTCCAGTGAAGAAACAGAGCAGATTAACAAACATTTTCATAACACACTGGAGCATTTGCGCTTGAGGCGGGAATCACCGGAATCTGAGGGGCCAATTTACGAGGGTCTCATCCTTTAG

Related Sequences

bmy_21708T0 Protein

Length: 736 aa      View alignments
>bmy_21708T0
MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPTDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDFNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL*