Sequence details bmy_21727 (Coding sequence)

Part of scaffold_3240 (Scaffold)

For more information consult the page for scaffold_3240 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNFSF4 ENSTTRG00000014661 (Bottlenosed dolphin)

Gene Details

tumor necrosis factor (ligand) superfamily, member 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013901, Bottlenosed dolphin)

Protein Percentage 94.52%
cDNA percentage 94.29%
Ka/Ks Ratio 0.30654 (Ka = 0.0396, Ks = 0.1293)

TNFSF4 ENSBTAG00000002894 (Cow)

Gene Details

tumor necrosis factor ligand superfamily member 4

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003763, Cow)

Protein Percentage 86.3%
cDNA percentage 88.36%
Ka/Ks Ratio 0.33881 (Ka = 0.0915, Ks = 0.2701)

TNFSF4  (Minke Whale)

Gene Details

tumor necrosis factor (ligand) superfamily, member 4

External Links

Gene match (Identifier: BACU000682, Minke Whale)

Protein Percentage 92.47%
cDNA percentage 94.52%
Ka/Ks Ratio 1.40759 (Ka = 0.0626, Ks = 0.0445)

Additional orthologs identified in other species via the OPTIC pipeline.

TNFSF4 (Human)   Tnfsf4 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 441 bp    Location:12547..65943   Strand:+
Raw sequence 
>bmy_21727
ATGGAAGATTCCAAGGAAGTTCTGAAAATTATCCTGCTGCAGGTGCCATCTCAATACCCTCCAATCCAAAGTATCAGAGTACAGTTTACCAAGTGTGAAAATGAGAATGGTTTCATCATCACATCCCCAAACAAGGATGGAACCATGAAGGTGCAAAACAACTCAATCATCATCAACTGTGATGGGTTTTATCTCATCTCCCTGAAGGGCTACTTCTCTCAGGAGCTCAGCCTCAGGCTTCAGTACCGGAAGGGTCGGGAACCCCTCTTCTCCCTGAGCAAGGTCACGTCTGTTGACTCTGTCACAGTGGCCAATCTGGCTTTCAAGGACAAAGTCTACCTGAATGTGACCACTCACAGTGCCTCCTGCGAAGACATTCAGGTGAATGGTGGGGAATTGATTCTCATTCATCAAAATCCTGGTGGATTCTGTGTCTACTGA

Related Sequences

bmy_21727T0 Protein

Length: 147 aa      View alignments
>bmy_21727T0
MEDSKEVLKIILLQVPSQYPPIQSIRVQFTKCENENGFIITSPNKDGTMKVQNNSIIINCDGFYLISLKGYFSQELSLRLQYRKGREPLFSLSKVTSVDSVTVANLAFKDKVYLNVTTHSASCEDIQVNGGELILIHQNPGGFCVY*