Part of scaffold_3322 (Scaffold)

For more information consult the page for scaffold_3322 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LTN1 ENSTTRG00000005024 (Bottlenosed dolphin)

Gene Details

listerin E3 ubiquitin protein ligase 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004751, Bottlenosed dolphin)

Protein Percentage 98.22%
cDNA percentage 98.69%
Ka/Ks Ratio 0.27548 (Ka = 0.0076, Ks = 0.0278)

BT.97325 ENSBTAG00000000201 (Cow)

Gene Details

E3 ubiquitin-protein ligase listerin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000032364, Cow)

Protein Percentage 94.38%
cDNA percentage 94.09%
Ka/Ks Ratio 0.16606 (Ka = 0.028, Ks = 0.1683)

LTN1  (Minke Whale)

Gene Details

listerin E3 ubiquitin protein ligase 1

External Links

Gene match (Identifier: BACU005039, Minke Whale)

Protein Percentage 98.51%
cDNA percentage 99.0%
Ka/Ks Ratio 0.4037 (Ka = 0.0069, Ks = 0.017)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 4227 bp    Location:702..38506   Strand:+
>bmy_21849
ATGAAAGATGAAGCATCCAAAGTGAGCCCATCTGTCCTTCTTAGCATTGATGACAGTGACCCCATTGTATGCCCTGCTCTCTGGGAAGCTGTGCTTTACACACTTACAACTATTGAGGACTGTTGGCTTCATGTAAATGCAAAAAAAAGTGTGTTTCCCAAGCTGTCAGCTATGGTTCGTGAAGGAGGTCGGGGTCTGGCTGCTGTCATATATCCTTATCTTCTGCCATTTATCAGCAAACTCCCTCAGTCTATTACAGATCCAAAGTTGGATTTCTTCAAAAATTTTCTCACCTCCCTAGTTGCAGGGCTATCAACAGAAAGAACCAAAACCAGCTTTTCAGAGTGCTCAGCAGTAGTATCTGCTTTTTTTGAATGCTTACGTTTTATAATGCAGCAAAACTTAGGTGAGGAAGAGATAGAAGAGATGCTCGTCAATGATCAGTTGATTCCTTTTATTGATGCAGTTCTCAAAGACCCAAGATTGCAAGATGGGCAGCTATTTAACCATTTGGCAGAAACTTTAAGTTCATGGGAAGCCAAAGCAGATTTGGATAAAGATGATAAAACAGCTTACAATTTGGAGAAAGTGCTACTGAATTTCTGGGAAAGACTGTCAGAGATCTGTGTTGAGAAAATCAATGAGCCAGAAGCCGATGTTAAGTCAGTTTTGGGTGTTTCTAACCTATTACAGGTCCTTCAGAAGCCAAAGAGCTCCTTGAAGTTAAATAAAAAAAACGTTGGTAAGGTTAGATTTGCTGATGAGATGCCCGAAAGTAATAAAGAGAATGAGAAATATGTCTCCTCAGAAGGAGAGAATAGTGAAGGCTCTGAATTAATGGCTGAACCTTCTCTCACTCACAGTTGCTCAGACCTTATATCACCCCTAAGGAAAAAACCTTTGGAAGACTTAGTCTGTAAACTAGCAGAAATGAGTGTTAATTATGTCAATGAACAGAAGTCGGAGCAACATCTAAGGTTTCTTTCCACTCTGCTCAACTCCTTCTCTTCAAGCCAAGTATTTAAAGTGCTATTAGGTGATGAAAAACAGAGTATTGTCAAAGCCAAGCCTCTTGAAATAACCARACTTGCACAAAAAAATCCCGCGATACAGTTTTTATACCAGAAAGTGGATCTGAAATGGAATTCTATGCTTCAAGTCATTGAAAAGGCATGTTCTAGTTCAGATAAACATGCTTTAGTAACTCCTTGGCTAAAAGGAGATATCCTTGGCGAGAAATTGGTAACCTTGGCAGATCATCTTTGTAATAAGGACTTGGAATCCACAGTATCTTCTGAATCTTACTTCTCAGAAAGATGGTCTCTTTTAAGCTTGGTATTATCCCAACATGTTAAAAATGATTACTTGATTGGAGAAGTATATGTTGAAAGAATTATTGTTAAACTTCATGAGACTTTATCCAAAACAAAGAAATTGTCAGAAGCTGAAAATAATGACTCATCAGTGTCTTTTATCTGTGATGTGGCCTATAACTATTTCAGCTCAGCGAAAGGATGCTTGCTAATGCCATCATCTGAAGATTTATTGTTAACTCTCTTTCAGTTGTGTGCTGAGAGCAAAGAAAAAACACATTTGCCAGACTTTCTTATCAGTAAACTGAAAAATACTTGGCTCTCTGGTGTGAATTTATTGGTCCATCAAACTGGCGACACATATAAACAGAGTACCTTCCTATGTTTATCTGCTCTGTGGCTGAAAAACCAAGTTCAGTCTTCATCATTGGATATCACAAGTCTTCAGGTCCTATTGTCTGCTGTTGATGATTTGCTAAATGCGCTTCTAGAGAGTGAAGATACTTATCTTCTGGGAGTTTATATTGGAAGTGTAATGCCAGACAACAGCGAATGGGAAAAGATGAGACAGTCTCTTCCTATGCAGTGGTTGCATAGACCTCTTTTAGAAGGAAGACTGAGTTTGAATTATGAGTGTTTCAAAACAGATTTTAAAGAACAAGATACAAAGAAACTTCCCAGCCATTTGTGTACTTCAGCATTATTGAGCAAAATGATATTAGTTGCACTGAAAAAGGAAATAGTCCTAGAAAATAATGAGCTTGAGAAAATAATTGCAGAACTGCTCTATTCATTGCAGTGGTATGAAGAATTAGACAATCCACCTATTTTTCTAACTGGATTTTGTGAAATGCTTCAAAAAATGAATATTACATATGATAACTTATGTGGACTTGGTAATACTTCTGGCCTTTTGCAGCTGTTATTTAACAGATCCAGGGAAAATGGCACCCTTTGGTCTCTTATTATTGCTAAGTTGATCCTTTCCCGAAGTGTTTCATCTGATGAAGTAAAACGGCATTATAGGAGAAAAGAAGGTTTTTTTCCACTAACAGAAGGTAATATGCATACCATTCAAAGTCTCTGTCCATTTTTGTCAAAAGAAGACAGGAAAGAATTCATTGCTCAATGTATACCTGCCCTTTTGGCCTGGACCAAGGAAGATGTTTGCAGTATTAATGGAGGTTTTGGACATCTCGCCATTTTCAATTCTTGTCTGCAAACCAAAAGCATAGATGATGGAGAGCTATTACATGGTATATTAAAAATTCTGATAACCTGGAAGAAAGATCATGAAGATATTTTTCTTTTCAAAGTAAGTCCAGAGATACTGGGTGTAAATATAGAAATAATCCGGTTCCTTTCCCTATTTCTGAAATACTGCTCATCTCCTTTGGCAGAGAGTGAATGGGACTTCATCATGTGCTCCATGTTGGCTTGGTTGGAGACAACAAATGAGAATCAGACATTGTATTCTGTTCCACTTGTACAACTGTTTGCCTGTGTCAGCTGTGATTTGACCTGTGAACTCAGTGCTTTTTTTGATTCCACAACTCTGGATACCACTGGCAGTCTTCCTGTAAATCTAATCAGTGAATGGAAAGAATTTTTTTCTCCAGGCATCCACAGTTTGCTTTTACCTCTTTTGGCAAGTGAAAAAGGGAATAATAGAGAAAGCAAAGATACATCTGAAACATCATTTCAGAATGCAATGCTGAAGCCCATGTGTGAAACATTAACTTATATCCCAAAGGATCAGCTATTGAGTCAAAAACTCCCTGCAAGATTGGTTGCTGGCCAAAAAACAAACTTGCCAGAGTATCTCCAGACTTTGTTAAATACATTAGCCCCATTACTCCTTTACAGAGCTCGACCTGTGCAAATTGCTGTTTATCATATGCTATACAAGTCACCACCAGCAGCACTGATGTCTCTTCTTAGCRCTCAAGAAGACTTACTAGAAAATGTTTTGGGGTGTATTCCTGTTGGACAGATAGTTACTATTAAGCCACTGAGTGAAGACTTCTGCTATGTTCTGGGATACCTCCTCACTTGGAAATTAATACTTACTTTCTTCAAAGCTGCTTCATCTCAGCTTCGAGCTCTGTATTCAATGTACCTTCGAAAAACAAAAAGCTTGAATAAATTGCTCTATCACCTGTTCAGGCTTATGCCAGAAAATCCGACCTTTGCAGAGACAGCTGTTGAGCTCTCCAATAAGGACCCTAAAACATTCTTTACAGAAGAGCTCCAGTTGGGTATTAGAGATACCTCAACTCTTCCATACCATATTCCACACTTGGCTTGTTCAGTCTATCACATGACATTAAAAGACTTGCCCGCCATGGTTAGGCTGTGGTGGAATAGTAGTGAGAAGCGTGTTTTCAGTATTGTAGATAGATTTACAAGCAAGTATGTTAGCAATGTTCTTTCTTTTCAAGAAATATCTTCTGTGCAAACAAGTACACAGCTATTTAATGGCATGACGGTTAAAGCTCGAGCTGCTACTCGAGAAGTCATGGCCACTTATACTATTGAAGATATAGTTATTGAACTTATAATACAGCTGCCTTCAAATTATCCATTGGGTTCAATAACAGTAGAAAGTGGGAAAAGAGTTGGAGTAGCCGTTCAGCAGTGGCGAAACTGGATGCTGCAGCTAAGCACTTACCTCACCCATCAAAATGGCAGTATTATGGAAGGCTTAGCATTATGGAAAAATAATGTAGACAAACGTTTTGAGGGTGTTGAAGATTGTATGATTTGTTTCTCAGTCATTCACGGTTTCAACTATTCTCTTCCCAAAAAAGCCTGTAGAACATGCAAGAAAAAGTTCCATTCAGCCTGCTTGTACAAATGGTTTACGTCTAGCAACAAATCCACTTGTCCGCTCTGTCGTGAGACCTTTTTCTGA

Related Sequences

bmy_21849T0 Protein

Length: 1409 aa      View alignments
>bmy_21849T0
MKDEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSAMVREGGRGLAAVIYPYLLPFISKLPQSITDPKLDFFKNFLTSLVAGLSTERTKTSFSECSAVVSAFFECLRFIMQQNLGEEEIEEMLVNDQLIPFIDAVLKDPRLQDGQLFNHLAETLSSWEAKADLDKDDKTAYNLEKVLLNFWERLSEICVEKINEPEADVKSVLGVSNLLQVLQKPKSSLKLNKKNVGKVRFADEMPESNKENEKYVSSEGENSEGSELMAEPSLTHSCSDLISPLRKKPLEDLVCKLAEMSVNYVNEQKSEQHLRFLSTLLNSFSSSQVFKVLLGDEKQSIVKAKPLEITXLAQKNPAIQFLYQKVDLKWNSMLQVIEKACSSSDKHALVTPWLKGDILGEKLVTLADHLCNKDLESTVSSESYFSERWSLLSLVLSQHVKNDYLIGEVYVERIIVKLHETLSKTKKLSEAENNDSSVSFICDVAYNYFSSAKGCLLMPSSEDLLLTLFQLCAESKEKTHLPDFLISKLKNTWLSGVNLLVHQTGDTYKQSTFLCLSALWLKNQVQSSSLDITSLQVLLSAVDDLLNALLESEDTYLLGVYIGSVMPDNSEWEKMRQSLPMQWLHRPLLEGRLSLNYECFKTDFKEQDTKKLPSHLCTSALLSKMILVALKKEIVLENNELEKIIAELLYSLQWYEELDNPPIFLTGFCEMLQKMNITYDNLCGLGNTSGLLQLLFNRSRENGTLWSLIIAKLILSRSVSSDEVKRHYRRKEGFFPLTEGNMHTIQSLCPFLSKEDRKEFIAQCIPALLAWTKEDVCSINGGFGHLAIFNSCLQTKSIDDGELLHGILKILITWKKDHEDIFLFKVSPEILGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTNENQTLYSVPLVQLFACVSCDLTCELSAFFDSTTLDTTGSLPVNLISEWKEFFSPGIHSLLLPLLASEKGNNRESKDTSETSFQNAMLKPMCETLTYIPKDQLLSQKLPARLVAGQKTNLPEYLQTLLNTLAPLLLYRARPVQIAVYHMLYKSPPAALMSLLSXQEDLLENVLGCIPVGQIVTIKPLSEDFCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTFAETAVELSNKDPKTFFTEELQLGIRDTSTLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFSIVDRFTSKYVSNVLSFQEISSVQTSTQLFNGMTVKARAATREVMATYTIEDIVIELIIQLPSNYPLGSITVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETFF*