Sequence details bmy_21852 (Coding sequence)

Part of scaffold_3351 (Scaffold)

For more information consult the page for scaffold_3351 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CAST ENSTTRG00000016061 (Bottlenosed dolphin)

Gene Details

calpastatin

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015227, Bottlenosed dolphin)

Protein Percentage 64.62%
cDNA percentage 72.32%
Ka/Ks Ratio 0.59415 (Ka = 0.3214, Ks = 0.541)

CAST ENSBTAG00000000874 (Cow)

Gene Details

calpastatin isoform I

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000036917, Cow)

Protein Percentage 58.9%
cDNA percentage 68.5%
Ka/Ks Ratio 0.44522 (Ka = 0.3592, Ks = 0.8069)

Additional orthologs identified in other species via the OPTIC pipeline.

CAST (Human)   Cast (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1419 bp    Location:1191..30421   Strand:+
Raw sequence 
>bmy_21852
ATGCAAAATATTGCCAAAATGCCAAATTACAAATTAGAAGCTATTAATAGACTCAAACCTGCTGTAAAAACAGAACCTGAGAAGAAGTCACAATCAACTAAGCCATCTGTGGTTCATGAGAAAAAAACCCAAGAAGTAAAGCCAAAGGAACACAGAGAGCCAAAAAGCCTACCCAAGCACTCATCAGATACGAGAAGCAAGCATGCTTATAATGAAAAAGCAGTTTCCAGATCAAGTGAGCAGCCAACATCAGAGAAATCAACAATACCAAAGACTAAGTCACAGGACACAATTTCCAGTGGTGGAAAGAGTGCTGTTACTGGCGTAGCTGCAGCATCTGGCAAACCAGTTGACAAGAATAAAGAAAATAAATCATTAATGTCAGCTGTACCAGTTGAATCCAAACCAAGTAAACCCTCTGGAAAGTCAGGCATGGGTGCTGCTTTGGATGACTTAATAGACACTTTAGGAGAACCTGAAGAAACTAAAGAAGATAATACAACATATACTGGACCTGAAGTTTTGGATCTGATGAGTTCTACTTACATAGAGGAATTGGGTAAAAGAGAAGTCACACTTCCTCCAAAATATAGGGAACTTTTAAATAAACCCCTGGGGCCCGATGATGCCATAGATGCCTTGTCATCAGACTTCACCTACAGTTCTCCTACAGCTGATGGGAAGAAAACCAAGAAAGAGAGGTCTACAGGAGAGGTTTTAAAAGCTCAGTCAGCTGAAGTAATCAAAAGTGCTGCTCCACCCAAGGAGAAAAAAAGAAAGGTGGAAGAGGACACAATGAGTGATCAGGCACTCGAGGCTCTGTCAGCTTCGCTGGGCAACTGGAAGCCGGAACCTGAGCTCGACCTCAGCTCCATTAAGGAAGTCAATGAGAATTGTTTAACTGAGTCCTCTGGAGGAAAAGAGGAGGGAAAGCATAGAGCCACCCTGCGGGCGTCCTTGGCCAGGCAGTGTGGTGGTGGGGACCCTCAGGAGCRCCAGCCTATCAGCTCAGGGTGGGAGCTGGCAGTTGTCGCTGTCACAGTGCTGCTGCCTCCGCTGTCACTTCCTGTTCTGAGTCACTGGGGAAGGGAAGTCGCTGGAAGTAGAAAAAACAATCACATAAGGAAAAACGATAAAGATCTTCATTGGAACAAACAGGCAATCTTATTTGAGCAAAATTACTCTGAAATTGAACCCCTGAGTGAATCAGAACTCATTGATGAACTTTCAGAAGATCTTGACCGATCTAAGTATAAAGAAAAACAATCTAAGCCAACTGAAAAAACAGAAGAGTCTCAGGCTGCTGCCCCTACTCCTGTGGGAGGGGCCGTGCCTCGGACCACCTTGTGTTCTGTGCAGTCGGTCCCGCCCCCGTCAGCCTCGGCGCAGATAGAATCTGACTCAGAGAATGAGAGCTGA

Related Sequences

bmy_21852T0 Protein

Length: 473 aa      View alignments
>bmy_21852T0
MQNIAKMPNYKLEAINRLKPAVKTEPEKKSQSTKPSVVHEKKTQEVKPKEHREPKSLPKHSSDTRSKHAYNEKAVSRSSEQPTSEKSTIPKTKSQDTISSGGKSAVTGVAAASGKPVDKNKENKSLMSAVPVESKPSKPSGKSGMGAALDDLIDTLGEPEETKEDNTTYTGPEVLDLMSSTYIEELGKREVTLPPKYRELLNKPLGPDDAIDALSSDFTYSSPTADGKKTKKERSTGEVLKAQSAEVIKSAAPPKEKKRKVEEDTMSDQALEALSASLGNWKPEPELDLSSIKEVNENCLTESSGGKEEGKHRATLRASLARQCGGGDPQEXQPISSGWELAVVAVTVLLPPLSLPVLSHWGREVAGSRKNNHIRKNDKDLHWNKQAILFEQNYSEIEPLSESELIDELSEDLDRSKYKEKQSKPTEKTEESQAAAPTPVGGAVPRTTLCSVQSVPPPSASAQIESDSENES*