Sequence detailsbmy_21959 (Coding sequence)

Part of scaffold_3417 (SequenceType object (1))

For more information consult the page for scaffold_3417 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PCDHA1ENSTTRG00000001785 (Bottlenosed dolphin)

Gene Details

protocadherin alpha 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000001684, Bottlenosed dolphin)

Protein Percentage 43.07%
cDNA percentage 51.73%
Ka/Ks Ratio 0.25959 (Ka = 0.6676, Ks = 2.5719)

BT.58387ENSBTAG00000030227 (Cow)

Gene Details

protocadherin alpha-13 precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000020497, Cow)

Protein Percentage 47.06%
cDNA percentage 55.92%
Ka/Ks Ratio 0.3194 (Ka = 0.5648, Ks = 1.7683)

Genome Location

Sequence SequenceType object (2)

Length: 2463 bp    Location:30369..22233   Strand:-
Raw sequence 
>bmy_21959
ATGGTGTTTTCCTGGCGAGGAGGCTTCGAAGCTCGGCGCCTGCTGCTCTCGCTTCTGCTCCTCGCAGCATGGGAGACGGGGAGCGGCCAGGTCCATTATTCGGTCTCTGAGGAAGCCAAACACGGCACCTTCGTGGGCCGCATCGCCCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGTCTGTTCCGGGTGGCGTCCAAAGGCCGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACCGGCCGCTGCAGGTGTTCCATGTGGAAGTGGAGGTGAAGGACATTAACGATAATCCACCGGTGTTCAGAGGAGAACAAAAGGTACTTATTTCTGAATCTGCTCCTCTGGACTCTCGTTTTCCTCTAGAGGGCGCTTCCGATGCGGATATCGGCCTAAACTCTCTTGTGACCTATAGGTTAAGTCTAAATGAGTATTTTACTCTTAAAGTGATAACGAAAACCGATAAAAGTATATTGCCTGAACTCATTCTTCGGAAGTCATTGGATAGAGAAGAAATGCCAGAACTTAATATATTGCTGACCGCTCTGGATGGTGGTAAACCCGAACTAACAGGATCTGTTCAGATTCAAATAACCATCCTGGATGTTAATGACAACGCTCCCGAGTTTGATACGCCTGGCTATAAAGTAGTGCTGTTTGAAAATATCCCAAACAACACCAGAGTGATTCAACTAAACGCTTCTGATCTAGACGAAGGATCAAATAGAGAAATTTCCTATGGAATCAGAATGATTCTGCCAGTGAGTGAGAAATGTATGTTTTCAATAAATGCAGAAACAGGTGAAATTAGGATTTATGGGAAACTGGATTTTGAAGAGAATAATGAGTATGAAATTCAGGTTAACGCTATTGATAAAGGGRTTCCTTCTATGGCAGGTCACTGCACGGTCCTGGTGGAAGTTCTGGACCTGAATGACAATACCCCCGAGGTAATGATCACTTCGCTGTCGCTCCCAGTGCGAGAGGACGCTCAGGTGGGCACCGTCATCGCCTTGATCAGCGTGTTCGACCATGACTCCGGCGCCAACGGGCAGGTGACCTGCTCATTAACACCCCAGGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAATTACTATTCGCTGGTGCTGGACAGCGCCTTGGATCTCTGGGAGGCGGGGAGCGGCCAGGTCCACTACTCGGTTCCGGAGGAGGCCAAACACGGAACTTTCGTGGGCCGCATAACGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGTCTGTTCCGGGTGGCATCCAAAGGCCGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGGAGCTGTGCGGGCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACCGACCGCTGCAGGTGTTCCATGTGGAGGTGGAAGTTACAGATATTAACGACAACCCACCTGTGTTCCCTGAAAGTGAAAAAAGAATAMTCATTGCTGAATCTAGACCTCCGGAAACTCGGTTCCCACTAGATGGCGCATCTGATGCAGATATTGGAGTAAACTCCGCCTTGACCTACCGAGTCTATCCCAACGATTATTTCACTTTGGACACACAAAACAACCGTGAACAAACGTCTTCCTTATCACTTGTGTTAAGGAAATCATTGGACAGAGAGGAAATTCAGGAACATAGTTTATTATTGACAGCTAGTGATGGAGGCAAACCCGAGCTGACCGGCACAGTTCAGCTGCTGATTACAATCCTGGATGTGAATGATAACGCCCCAGAATTTGATCACTTAATTTATAAAGTGAGAATGTTAGAGAATGCATTTAATGGAACATTAGTGATCAAACTAAATGCCACAGACCCTGATGATGGGACAAATGCAGACATAATCTACTCATTTAGAAGACCTGTATCACCTGCAGTATTATATGCGTTTTCCATAAATCCCGGCAGCGGAGAAATTCGGACAAAAGGTAAATTGGATTTTGAAGAAARKAAATTGTATGAAATATCCGTGGAAGCAATTGACAAGGGGAATATTCCAATGGCGGGTCATTGTACCATTTTGGTGGAAATAGTAGATATAAATGATAACGCCCCAGAAGTTACCGTCACTTCTTTGGCTCTTCCGGTGCGAGAGGACGCTCAGGTGGGCACTGTCATCGCCTTGATCAGCGTGTCCGACCGTGACTCCGGCGCCAACGGGCAGGTGACCTGCTCCCTGATGCCCCACAGCCCCTTCAAGCTGGTGTCCACCTTCAAGAATTACTATTCACTAGTGCTTGACAGCGCCTTGGACCGCGAGAGCGTGGCGAACTATGAGACACATCACTGTTTCCCTGTCTGA

Related Sequences

bmy_21959T0 SequenceType object (3)

Length: 821 aa      View alignments
>bmy_21959T0
MVFSWRGGFEARRLLLSLLLLAAWETGSGQVHYSVSEEAKHGTFVGRIAQDLGLELAELVPRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVKDINDNPPVFRGEQKVLISESAPLDSRFPLEGASDADIGLNSLVTYRLSLNEYFTLKVITKTDKSILPELILRKSLDREEMPELNILLTALDGGKPELTGSVQIQITILDVNDNAPEFDTPGYKVVLFENIPNNTRVIQLNASDLDEGSNREISYGIRMILPVSEKCMFSINAETGEIRIYGKLDFEENNEYEIQVNAIDKGXPSMAGHCTVLVEVLDLNDNTPEVMITSLSLPVREDAQVGTVIALISVFDHDSGANGQVTCSLTPQVPFKLVSTFKNYYSLVLDSALDLWEAGSGQVHYSVPEEAKHGTFVGRITQDLGLELAELVPRLFRVASKGRGDLLEVNLQNGILFVNSRIDREELCGRSAECSIHLEVIVDRPLQVFHVEVEVTDINDNPPVFPESEKRIJIAESRPPETRFPLDGASDADIGVNSALTYRVYPNDYFTLDTQNNREQTSSLSLVLRKSLDREEIQEHSLLLTASDGGKPELTGTVQLLITILDVNDNAPEFDHLIYKVRMLENAFNGTLVIKLNATDPDDGTNADIIYSFRRPVSPAVLYAFSINPGSGEIRTKGKLDFEEXKLYEISVEAIDKGNIPMAGHCTILVEIVDINDNAPEVTVTSLALPVREDAQVGTVIALISVSDRDSGANGQVTCSLMPHSPFKLVSTFKNYYSLVLDSALDRESVANYETHHCFPV*