Part of scaffold_3458 (Scaffold)

For more information consult the page for scaffold_3458 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NR1D2 ENSTTRG00000010829 (Bottlenosed dolphin)

Gene Details

nuclear receptor subfamily 1, group D, member 2

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000010268, Bottlenosed dolphin)

Protein Percentage 92.78%
cDNA percentage 93.49%
Ka/Ks Ratio 0.2343 (Ka = 0.0172, Ks = 0.0733)

NR1D2 ENSBTAG00000018024 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023994, Cow)

Protein Percentage 87.87%
cDNA percentage 87.93%
Ka/Ks Ratio 0.17091 (Ka = 0.0641, Ks = 0.3749)

NR1D2  (Minke Whale)

Gene Details

nuclear receptor subfamily 1, group D, member 2

External Links

Gene match (Identifier: BACU005082, Minke Whale)

Protein Percentage 95.38%
cDNA percentage 96.63%
Ka/Ks Ratio 0.32923 (Ka = 0.0209, Ks = 0.0633)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1800 bp    Location:105235..70360   Strand:-
>bmy_22023
ATGGAATCCAGACACAAAACGAACCGGTATGCAGTCGGAGGTGTGATTGCCTATATCAGTTCTTCCAGCTCAGCCTCTAGCCCTGCCTCTTGTCACAGTGAGGGCTCCGAGAACAGTTTCCAGTCCTCCTCCTCCTCTGTCCCATCTTCTCCAACTAGCWCTAATTCTGATAACAACGGGAATCCCAAAAATGGCGATCTCTCCAATATTGAAGGCATCCTGAAGAATGATCGGATAGATTGTTCTATGAAAACAAGCAAATCGAGTGCACCTGGGATGACAAAGAGTCACAGTGCAGTGACAATGCTGAATCTGGTTTCTAGAACGGAGTACTTACTCGTGGAAAGGGAATTTAGTGGCATGGTTCTACTGTGTAAAGTCTGTGGGGATGTGGCGTCAGGATTCCACTATGGAGTTCATGCTTGTGAAGGCTGTAAGGGTTTTTTCCGGAGAAGCATTCAGCAAAACATTCAGTACAAGAAGTGCCTGAAGAATGAAAACTGCTCTATAATGAGAATGAATAGGAACAGATGTCAGCAGTGTCGTTTCAAAAAGTGTCTGTCTGTTGGAATGTCRAGAGATGCTGTTCGGTTTGGTCGTATTCCTAAGCGTGAAAAACAGAGGATGCTAATTGAGATGCAGAGTGCGATGAAGACCATGATGAACAGCCAGTTCAGTGGTCATCTGCAGAATGACCCATTAGTAGAACATCATGAGCAGACAGCTTTACCAGCCCAGGAACAGCTGCGACCCAAGCCCCAGCTGGAGCAAGAGAACATCAAAAGCTCTGCTCCCAYTTCGGATTTTGCCAAGGAAGAAGTGATCGGCATGGTAACCAGAGCGCACAAGGATACCTTTATGTATAACCAGGAGCAGCGAGAAAACTCGGCAGAGACCGCGCAGCCGCAGAGAGAACGGATTCCTAAGAACTTGGAGCAGTATAATTTGAATCATGACCGGTGTGGCGGTGGGCTTAGCAGCCACTTTCCTTGTAGTGAGAGCCAGCAGCATCTCGGTGGACAGTACAAAGGGAGGAGCGTGATGCATTACGCCAACGGGCATGCCATTTGTATTACAAATGGACACTGTGTGAACTTCTCCAATGCTTATACTCAGAGAGCATGTGATAGAGTTTCCATAGATGGATGTTCTCAGAATGAGAACAAGAATAGTTACCTGTGCAACGCTGGAGGGAGAATGCATCTGGTTTGTCCAATGAATAAGTCTCCGTATGTGGATCCTCATAAATCAGGGCATGAAATCTGGGAAGAATTTTCGATGAGCTTCACCCCAGCAGTGAAAGAAGTGGTGGAGTTTGCAAAGCGTATTCCTGGGTTCAGAGATCTCTCTCAACATGACCAGGTCAACCTTTTAAAGGCTGGGACTTTCGAGGTTTTAATGGTACGGTTTGCATCATTATTTGACGCAAAGGAACGTACTGTCACCTTTTTAAGTGGAAAGAAGTATAGTGTGGATGACTTACGCTCAATGGGAGCAGGGGATCTGCTGAACTCTATGTTTGAATTTAGTGAGAAGCTGAATGCCCTCCGACTCCGTGGGGAAGAGATGAGCCTGTTTACAGCAGTCGTCCTGGTCTCTGCAGATCGATCTGGGATAGAAAACGTCAACTCTGTGGAGGCTTTGCAGGAAACGCTCATCCGCGCCCTAAGGACCTTAATAATGAAAAACCATCCAAACGAGGCCTCTATTTTTACAAAACTTCTTCTAAAGTTGCCAGATCTTCGATCTTTAAACAACATGCACTCCGAGGAGCTCTTGGCCTTTAAAGTTCACCCCTAA

Related Sequences

bmy_22023T0 Protein

Length: 600 aa      View alignments
>bmy_22023T0
MESRHKTNRYAVGGVIAYISSSSSASSPASCHSEGSENSFQSSSSSVPSSPTSXNSDNNGNPKNGDLSNIEGILKNDRIDCSMKTSKSSAPGMTKSHSAVTMLNLVSRTEYLLVEREFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNSQFSGHLQNDPLVEHHEQTALPAQEQLRPKPQLEQENIKSSAPXSDFAKEEVIGMVTRAHKDTFMYNQEQRENSAETAQPQRERIPKNLEQYNLNHDRCGGGLSSHFPCSESQQHLGGQYKGRSVMHYANGHAICITNGHCVNFSNAYTQRACDRVSIDGCSQNENKNSYLCNAGGRMHLVCPMNKSPYVDPHKSGHEIWEEFSMSFTPAVKEVVEFAKRIPGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLRSMGAGDLLNSMFEFSEKLNALRLRGEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRSLNNMHSEELLAFKVHP*