Part of scaffold_3505 (Scaffold)

For more information consult the page for scaffold_3505 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TAF1D ENSTTRG00000001139 (Bottlenosed dolphin)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001069, Bottlenosed dolphin)

Protein Percentage 87.5%
cDNA percentage 91.3%
Ka/Ks Ratio 0.52853 (Ka = 0.0819, Ks = 0.155)

TAF1D ENSBTAG00000003545 (Cow)

Gene Details

TATA box-binding protein-associated factor RNA polymerase I subunit D

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000004611, Cow)

Protein Percentage 81.55%
cDNA percentage 88.31%
Ka/Ks Ratio 0.51003 (Ka = 0.1108, Ks = 0.2173)

TAF1D  (Minke Whale)

Gene Details

TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa

External Links

Gene match (Identifier: BACU018442, Minke Whale)

Protein Percentage 92.78%
cDNA percentage 94.93%
Ka/Ks Ratio 0.62586 (Ka = 0.0489, Ks = 0.0781)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 876 bp    Location:65903..62753   Strand:-
>bmy_22035
ATGGATTCTCTCAACTATGCAACGGTATCTGATTCAGCTGTGGAAATTGAGAATCAAAGTGATAACTCTTCCTCTGGTAGCAGCTTATTTAAAACTCAGTGTGTTCCTATCCCACCTAAAAGGAGGCAAAGAAACCCTGTTAGAAAATTTGTTCACAAACCTGAAAGTACTCAAGCAAGAGATTCATCTAGTGACTCATCTATAGAGCCAAGACCATTGACTTTAAAAGCTATTTTTGAAAGATTCAAAAAAAAGAAACGTAAAAAGAGAAAATACAAGCCAACGGGAAGATCAAGGGGAAGACCAAAAGGAAGGAGAAACACTAGAATCTCACAAATAAATAAGAAACAATTTAAAGACAAAGGACCTGGTTTCCCATTTTTAGAATCAGGAAATGGAAGAAAACTATTACCTTGGAGAAAAATTTTAACCTTTGAGCAAGCAGTGGCAAGAGGATTTTTTAACTACCTTGAAAAACTGAAGTATGAATACCATCTCAAGGAATCCTTGAAACAAATGAATGTTGGTGAAGATTTAGAAAAAGAAGACTTTGATAGTCGTAGATACAGATACTTGGATGATGATGGATCTCTCTCTCCTATTGAAGAGTCAGCTTTTGAAAGGTTCAATGCCCTTGGTGCAGGAAATGCAAGAATAAAAATAAGAATTTTATGGATAATTGGTGAGAACATGAATTATCAATACTGTATCAGTAAAAACAATACTATTGAGGATAATTATTTCATAATAAGTTCTGAATTACCAAAGAAGAAGAATGTATATTTGGAACAAGAGGAATATACTGAAGAAGCTGCACTGCCTAAAAAGAGAGCATCAAAATCCAAAAAACACTGGACAGAGGACAGAATGGCCTGA

Related Sequences

bmy_22035T0 Protein

Length: 292 aa      View alignments
>bmy_22035T0
MDSLNYATVSDSAVEIENQSDNSSSGSSLFKTQCVPIPPKRRQRNPVRKFVHKPESTQARDSSSDSSIEPRPLTLKAIFERFKKKKRKKRKYKPTGRSRGRPKGRRNTRISQINKKQFKDKGPGFPFLESGNGRKLLPWRKILTFEQAVARGFFNYLEKLKYEYHLKESLKQMNVGEDLEKEDFDSRRYRYLDDDGSLSPIEESAFERFNALGAGNARIKIRILWIIGENMNYQYCISKNNTIEDNYFIISSELPKKKNVYLEQEEYTEEAALPKKRASKSKKHWTEDRMA*