Part of scaffold_3492 (Scaffold)

For more information consult the page for scaffold_3492 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHM ENSBTAG00000009598 (Cow)

Gene Details

rab proteins geranylgeranyltransferase component A 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000012631, Cow)

Protein Percentage 76.43%
cDNA percentage 82.0%
Ka/Ks Ratio 0.50319 (Ka = 0.1757, Ks = 0.3493)

CHM  (Minke Whale)

Gene Details

choroideremia (Rab escort protein 1)

External Links

Gene match (Identifier: BACU011391, Minke Whale)

Protein Percentage 16.1%
cDNA percentage 35.6%
Ka/Ks Ratio 0.23482 (Ka = 1.4567, Ks = 6.2033)

Genome Location

Sequence Coding sequence

Length: 972 bp    Location:59373..114732   Strand:+
>bmy_22051
ATGCCATTAACTGAGACTGAGATTCCAAGTGGGGAAGCAGCAATAGCTCTTGACTTTTCTCCACCTAGCACAGCATGTAAAGCAATCATAGATCAGTTTGGTCAGAGAATAATCTCTAAGCATTTCCTTGTGGAAGACAGTTACTTTTCTGAGAACACATGCTCGCATGTGCAATACAGGCAGATCTCCAGGGCAGTCTTGATTACGGATAGGTCTGTACTAAAAACAGATTCAGATCAACAGATTTCCATTTTGACAGTGCCAGCAGAAGAACCAGGAGCTTTTGCTGTTCGGGTCATTGAGTTATGTTCCTCAACAATGACATGCATGAAAGGCACATTATTTGTTCAAACAGTTGATACAGTTCATGTACCTAATGTTGTGGGAATCAATTTCCAGCTTGACTTTATAGGAAATTTAAGGAGCATACTGAAAATTTTCATTATTTCCCAGGTCAAGCACCAAGAAGTGAAAGTGCTGAATATTTACGGTTCATTAAAAGTTTTCATGGCTTATATTTGGCTTGATTTAGAATTTGTAAAACCTATTGTCATGAAGCACGGATTTGATCTTGCAAATAAACTGATATTTCCTAGTGATCTTAAGTTGACATTCAAGGAAAATGAAGAAGTTGAAAAGCCAAGACTTCTGTGGGCTCTTTACTTCAATATGAGAGATTCTTCAGACGTCAGCAGGAACTCTTATAATGATTTACCATCCAACGTTTATGTCTGCTCTGGCCCAGACTGTGCTTTAGGAAATGATAATGCAGTCAAACAGGCTGAAGCACTTTTCCAACAAATCTGCCCCAACGAAGACTTCTGTCCACCCCCACCAAATCCTGAAGACATTATCCTTGATGGAGACAGTTTACAACCAGAGGCTTCAGAATCCAGTGCTATACCAGAGGCCAACTCAGAGACTCCCAGGGAAAGCGCAAATCTGAGAAACCCACAGGAGCCCTCTGAATAA

Related Sequences

bmy_22051T0 Protein

Length: 324 aa     
>bmy_22051T0
MPLTETEIPSGEAAIALDFSPPSTACKAIIDQFGQRIISKHFLVEDSYFSENTCSHVQYRQISRAVLITDRSVLKTDSDQQISILTVPAEEPGAFAVRVIELCSSTMTCMKGTLFVQTVDTVHVPNVVGINFQLDFIGNLRSILKIFIISQVKHQEVKVLNIYGSLKVFMAYIWLDLEFVKPIVMKHGFDLANKLIFPSDLKLTFKENEEVEKPRLLWALYFNMRDSSDVSRNSYNDLPSNVYVCSGPDCALGNDNAVKQAEALFQQICPNEDFCPPPPNPEDIILDGDSLQPEASESSAIPEANSETPRESANLRNPQEPSE*