Part of scaffold_3604 (Scaffold)

For more information consult the page for scaffold_3604 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

EFEMP1 ENSTTRG00000001452 (Bottlenosed dolphin)

Gene Details

EGF containing fibulin-like extracellular matrix protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001367, Bottlenosed dolphin)

Protein Percentage 94.22%
cDNA percentage 94.99%
Ka/Ks Ratio 0.61857 (Ka = 0.0457, Ks = 0.0739)

EFEMP1 ENSBTAG00000017448 (Cow)

Gene Details

EGF-containing fibulin-like extracellular matrix protein 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023206, Cow)

Protein Percentage 91.04%
cDNA percentage 91.33%
Ka/Ks Ratio 0.27672 (Ka = 0.0586, Ks = 0.2116)

EFEMP1  (Minke Whale)

Gene Details

EGF containing fibulin-like extracellular matrix protein 1

External Links

Gene match (Identifier: BACU013858, Minke Whale)

Protein Percentage 93.93%
cDNA percentage 95.38%
Ka/Ks Ratio 0.97405 (Ka = 0.0477, Ks = 0.049)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1041 bp    Location:48860..32473   Strand:-
>bmy_22123
ATGATGGCAAAATGGAGGAACTATCAACATCTTCACAACCGACTCAAACTATTTTTGTGCTGCATGTCTTTAACAGACATAGATGAGTGCACTGCAGGGACACACAACTGTAGAGCCGACCAAGTGTGCATCAATTTACGAGGTTCCTTCACCTGTCAGTGCCCTCCTGGGTACCAGAAGCGAGGAGAGCAGTGTGTAGATATAGACGAATGTACCATCCCTCCATATTGCCACCAAAGATGCGTGAACACACCAGGATCATTTTATTGCCAGTGCAGTCCTGGGTTTCAATTGGCAGCAAACAACTATACCTGCGTAGACATAAATGAATGTGATGCCAGCAATCAATGTGCTCAGCAATGCTACAACATTCTTGGTTCATTCATCTGTCAGTGCAATCAAGGATATGAGCTAAGCAGTGACAGGCTCAACTGTGAAGACATTGATGAATGCAGAACCTCGAGCTACCTGTGTCAATATCAATGTGTCAATGAGCCTGGGAAATTCTCTTGTATGTGTCCCCAGGGATACCAAGTGGTGAGAAGTAGAACATGTCAGGATATAAATGAGTGTGAGACCACAAATGAATGTCGGGAAGATGAAATGTGTTGGAATTATCATGGCGGCTTCCGTTGTTACCCACGAAATCCTTGTCAAGATCCTTACGTTCTAACATCAGAGAACCGATGTGTTTGCCCAGTCTCAAATGCGCTGTGCCGAGAACTTCCCCAATCCATAGTCTACAAATACATGAGCATCCGATCTGATAGGTCTGTGCCATCTGACATCTTCCAGATACAGGCCACAACCATTTATCCCAACACTATCAATACTTTTCGGATTAAATCTGGAAATGAAAATAGAGAGTTCTACCTAAGACAAACAAGTCCTGTAAGTGCAATGCTTGTGCTGGTGAAGTCGCTATCAGGACCAAGAGAATATATAGTGGACCTGGAGATGCTGACAGTCAACAGTATGGGAACCTTCCGCACCAGCTCAGTGTTAAGATTGACAATAATAGTGGGACCATTTTCATTTTAG

Related Sequences

bmy_22123T0 Protein

Length: 347 aa      View alignments
>bmy_22123T0
MMAKWRNYQHLHNRLKLFLCCMSLTDIDECTAGTHNCRADQVCINLRGSFTCQCPPGYQKRGEQCVDIDECTIPPYCHQRCVNTPGSFYCQCSPGFQLAANNYTCVDINECDASNQCAQQCYNILGSFICQCNQGYELSSDRLNCEDIDECRTSSYLCQYQCVNEPGKFSCMCPQGYQVVRSRTCQDINECETTNECREDEMCWNYHGGFRCYPRNPCQDPYVLTSENRCVCPVSNALCRELPQSIVYKYMSIRSDRSVPSDIFQIQATTIYPNTINTFRIKSGNENREFYLRQTSPVSAMLVLVKSLSGPREYIVDLEMLTVNSMGTFRTSSVLRLTIIVGPFSF*