Part of scaffold_3715 (Scaffold)

For more information consult the page for scaffold_3715 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PROM1 ENSTTRG00000002538 (Bottlenosed dolphin)

Gene Details

prominin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002384, Bottlenosed dolphin)

Protein Percentage 94.23%
cDNA percentage 95.51%
Ka/Ks Ratio 0.49333 (Ka = 0.038, Ks = 0.0771)

PROM1 ENSBTAG00000013736 (Cow)

Gene Details

prominin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000018252, Cow)

Protein Percentage 63.98%
cDNA percentage 79.05%
Ka/Ks Ratio 0.91987 (Ka = 0.2537, Ks = 0.2758)

PROM1  (Minke Whale)

Gene Details

prominin 1

External Links

Gene match (Identifier: BACU001733, Minke Whale)

Protein Percentage 96.55%
cDNA percentage 96.93%
Ka/Ks Ratio 0.39966 (Ka = 0.0231, Ks = 0.0578)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1569 bp    Location:88116..53937   Strand:-
>bmy_22189
ATGAGACAGTTATCTGCAAATCTTAGCAACAGCCTGAGTAACGTTAAAAGGAACCTGGAGCAAGCACTCAATGACCCCATGTGCTCTGTGCATCCGGTAATGACCACTTGCAGCAACATTATGAACTCTCTAAGCCTTCTGGATGGCAGCATCGATTTTGATCAGGGCTATAAATCTTTTAATGCTATACCTGGGATAGTTCAAAATGAAACCGTGAACGTCGTATCAGATGTCAAAATGACCTTGGATTCCATTGGTTCTGATATCAAAAATATAAGCAAAAATATTCCTATTCAGGATAAGCTGTCAAATTTCATTCGTTACCTTAATGACACTGAAAATTACATCCACCGCCATCTACCCACTTTGGAAGAATATGATTCATACAGGTGGCTGGGTTCCTTGGTCGTCTGCTGTTTACTGACCCTCATAGTGATTTTTTATTGCCTGGGCTTATTGTGTGGCACATACGGCTACAACCAGAATGCCACCCCAACCAGACGAGGCTGCGTCTCAAACACTGGTGGCATCTTCCTCATGGTCGGGGTTGGATTCAGTTTCTTCTTTTGTTGGCTATTGATGACCATCGTGGTTCTGACTTTTGTTGTTGGTGGAAATGTGGAAAAACTGGTCTGTGAACCTTACCAAAACAAAAAGTTATTCCAGGTTTTGGACACGCCATATTTACTAAATGCGGATTGGAAATACTATCTCTCTGGCATGGTATTTAACAAACCAGATATTCATCTCACTTTTGAACAAGTTTACAGAAGCAATTACCGAGGAAAATCAAGGGGAGAGCATACCGGAAACATAAATAATAATTTTGAAAATATGAATATAAGWATTGACAATATAGTTCTGCTGGATGAGGCAGGAAGAAGAAACCTTATGGATTTCAGTTCTTCAGGAATAGACAAAATAGACTATGGTGCCTTCATGGCTGCGACTGGGAAAAATCCCACAAAAGTGAATCTTTTATCATTTGCAAATGATCTAGAAGTAAAAGCCAACCATTTGCCCCAAGGAAATTTGAAACAGACCCTGAAAAATAATGCAGGAATCTTAAGAAATATTCATCGTGACGAAATCATTCCTTTGCAAAAATTAATGAGTGCTGTGCACCAAAAATTGAAGGAGCTTCAACAGAAAAGCAGTGGATTGGGGGTGAAAGTGGCCAATATCATTCTCTTTTTGGATGCTGCTCAGGACTTCATCACAAACCGAATCTCCACAATTATTGCTGAAGAAAGTAAGAAGTATGGGAATTCGATAATGAGCTACTTTGAACATTATCTGCAGTGGGTCAAGATCTCTATCACTGAGCAAATGGCAGCCTGCAAACCAGTGGCCACCGCTCTAGATTCGGCTATTGATGTCTTTCTGTGCAGCTACATTATCGACCCCCTGAATTTGTTTTGGTTTGGTATAGGAAAAGCTACCGCATTTTTACTTCCGGCTATCATTTTTGCTGTAAAGCTGGCTAAGTACTACCGTCGAATGGATTCTGAAGATGTATATGACGATGATGTTGAAACTATACCCATGAAAAAATATGGAAAATGCTAA

Related Sequences

bmy_22189T0 Protein

Length: 523 aa      View alignments
>bmy_22189T0
MRQLSANLSNSLSNVKRNLEQALNDPMCSVHPVMTTCSNIMNSLSLLDGSIDFDQGYKSFNAIPGIVQNETVNVVSDVKMTLDSIGSDIKNISKNIPIQDKLSNFIRYLNDTENYIHRHLPTLEEYDSYRWLGSLVVCCLLTLIVIFYCLGLLCGTYGYNQNATPTRRGCVSNTGGIFLMVGVGFSFFFCWLLMTIVVLTFVVGGNVEKLVCEPYQNKKLFQVLDTPYLLNADWKYYLSGMVFNKPDIHLTFEQVYRSNYRGKSRGEHTGNINNNFENMNIXIDNIVLLDEAGRRNLMDFSSSGIDKIDYGAFMAATGKNPTKVNLLSFANDLEVKANHLPQGNLKQTLKNNAGILRNIHRDEIIPLQKLMSAVHQKLKELQQKSSGLGVKVANIILFLDAAQDFITNRISTIIAEESKKYGNSIMSYFEHYLQWVKISITEQMAACKPVATALDSAIDVFLCSYIIDPLNLFWFGIGKATAFLLPAIIFAVKLAKYYRRMDSEDVYDDDVETIPMKKYGKC*