Part of scaffold_3989 (Scaffold)

For more information consult the page for scaffold_3989 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHD1L ENSTTRG00000011711 (Bottlenosed dolphin)

Gene Details

chromodomain helicase DNA binding protein 1-like

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011110, Bottlenosed dolphin)

Protein Percentage 86.87%
cDNA percentage 89.98%
Ka/Ks Ratio 0.73994 (Ka = 0.0611, Ks = 0.0826)

BT.18335 ENSBTAG00000020831 (Cow)

Gene Details

chromodomain-helicase-DNA-binding protein 1-like

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027762, Cow)

Protein Percentage 87.91%
cDNA percentage 90.06%
Ka/Ks Ratio 0.33866 (Ka = 0.0733, Ks = 0.2164)

CHD1L  (Minke Whale)

Gene Details

chromodomain helicase DNA binding protein 1-like

External Links

Gene match (Identifier: BACU009438, Minke Whale)

Protein Percentage 93.42%
cDNA percentage 94.94%
Ka/Ks Ratio 0.65435 (Ka = 0.0465, Ks = 0.071)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1968 bp    Location:10773..57323   Strand:+
>bmy_22302
GACTTGCTGCTTTTTTTATTTCTAGGGATCCATCTACGCCCTTATCAGCTGGAGGGAGTCAACTGGCTAGCCCAACGCTTCCATTGTCAGAATGGCTGCATACTGGGAGATGAGATGGGCTTGGGTAAGACCTGCCAGACTATTGCTCTCTTCATTTACTTGGCAGGAAGATTAAACGATGAAGGACCATTTCTGATTCTTTGTCCCTTGTCTGTTTTGAGCAACTGGAAAGAAGAGATGGAGAGGTGCTATGTGAAATATGATAAAACAACATATTGTCCTAAGCAATTTGCTCCAGGTCTTTCCTGTGTAACATATTCAGGTGACAAGGAGGAGAGAGCCCACCAACAGCAAGACCTAAGGCAGGAGTCACGTTTTCATGTGCTGCTAACTACCTATGAGGTTTGCTTGAAAGATGCATCGTTTCTAAAGTCCTTCCCTTGGAGTGTTCTTGTTGTGGATGAAGCTCACAGGTTGAAAAACCAAAGCTCCTTGCTGCATAAGACACTTTCAGAGTTTTCAGTCGTCTTCAATCTCYTGTTGACCGGAACTCCCATCCAGAACAGCCTTCGAGAGCTCTACTCTCTCCTCAGTTTTGTGGAGCCTGATCTCTTTTCCAAGGAGCAGGTGGAAGATTTCATTCAACGTTACCAGGATATTGAGAAAGAGTCTGAGTCAGGTGTGGAACCAGAGCCTTTTGAAATTGGAGATCACCTGATTGAGGCCAGTGGGAAACTTCACCTGCTGGATAAGCTGCTGGCATTCCTGTATTCCAGGGGCCATCGAGTTTTACTTTTYTCCCAAATGACCCAGATGTTGGATATTCTCCAAGACTACATGGATTATAGAGGCTACAGCTATGAGCGTGTGGATGGCTCYGTGAGAGGAGAAGAGAGACACCTGGCCATCAAGAACTTTGGACAGCAGCCCATCTTTATTTTTCTCCTGAGTACCAGGGCAGGGGAAAACGCAGAGACAAAAATTTCATTTGCAAAATTGAGTGAGATACTCAAATTCGGTTTGGATAAACTGCTGTCCTCTGAGGGGAGCACCATGGATGAAATAGACCTGGAGTCTATCCTGGGAGAAACAAAAGATGGCCAGTGGATCTCTGGTGCCCTGCCGACAGCAGAAGAAAGAAGCAGAGAACAAGAGGAAGGAAAAAACCACATGTACTTATTTGAAGGTAAAGATTATTCTAAGGAGCCTAGTAAAGAAGACAGAAAATCATTTGAGCAACTGGTGAATCTTGAGAAAACCCTTTTGGAGAAGACTAGTCAAGAGGGCCGGTTACTCCGAAATAAAGGCAGTGTTCTCATCCCAGGCCTTGTGGAGGGGTCTACCAAAAGGAAGCGGATTCTGAGCCCAGAAGAGCTGGAGGACAGGAGGAAGAAAAGACAAGAAGCAGCAGCCAAGAGAAAGAAACTATTAGAGGAGAAGAAGAGGAAAAAGGAAGAAGCAGAACATAAGAAAAAGATGGCCTGGTGGGAGTCCAACGATTACCAGTCCTTCTGCCTGCCTTCCGAGGAGAGCGAACCAGAGGACCTGGAGGACTGGGAAGATGAGCGCTCTGCCCAACTGGATTATCAGGACCCAGACTCGACCTCCATCAAGTATGTAAGCGGTGATGTCACCCACCCACAGGCTGGGGCGGAGGATGCTGTCATCGTGCACTGCGTAGATGACTCTGGCCGCTGGGGCAGAGGTGGTTTATTCACAGCTCTGGAAAAAAGATCTGCTGAGCCAAGAAAAATATATGAGCTGGCTGGGAAAATGAAAGCAAGTGTCCATCTTCCACGCATTGGACATGCCACGAAAGGTTTTAACTGGTATGGTACTGAGCGACTTATTCGGAAACACTTGGCCTCAAGAGGCATCCCAACTTACATGTATCCTTTTGTTATCCTGATGGTGTGCACTTCCAGCTCAAAAGGGGAAAATGTCTTGCATTTTTCTGGTGTCATTATT

Related Sequences

bmy_22302T0 Protein

Length: 656 aa      View alignments
>bmy_22302T0
DLLLFLFLGIHLRPYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMERCYVKYDKTTYCPKQFAPGLSCVTYSGDKEERAHQQQDLRQESRFHVLLTTYEVCLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFNLLLTGTPIQNSLRELYSLLSFVEPDLFSKEQVEDFIQRYQDIEKESESGVEPEPFEIGDHLIEASGKLHLLDKLLAFLYSRGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQPIFIFLLSTRAGENAETKISFAKLSEILKFGLDKLLSSEGSTMDEIDLESILGETKDGQWISGALPTAEERSREQEEGKNHMYLFEGKDYSKEPSKEDRKSFEQLVNLEKTLLEKTSQEGRLLRNKGSVLIPGLVEGSTKRKRILSPEELEDRRKKRQEAAAKRKKLLEEKKRKKEEAEHKKKMAWWESNDYQSFCLPSEESEPEDLEDWEDERSAQLDYQDPDSTSIKYVSGDVTHPQAGAEDAVIVHCVDDSGRWGRGGLFTALEKRSAEPRKIYELAGKMKASVHLPRIGHATKGFNWYGTERLIRKHLASRGIPTYMYPFVILMVCTSSSKGENVLHFSGVII