Part of scaffold_4048 (Scaffold)

For more information consult the page for scaffold_4048 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APBA1 ENSTTRG00000003168 (Bottlenosed dolphin)

Gene Details

amyloid beta (A4) precursor protein-binding, family A, member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002970, Bottlenosed dolphin)

Protein Percentage 96.82%
cDNA percentage 96.52%
Ka/Ks Ratio 0.17262 (Ka = 0.019, Ks = 0.11)

APBA1 ENSBTAG00000008877 (Cow)

Gene Details

amyloid beta A4 precursor protein-binding family A member 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000011688, Cow)

Protein Percentage 96.36%
cDNA percentage 92.95%
Ka/Ks Ratio 0.07304 (Ka = 0.0214, Ks = 0.2931)

APBA1  (Minke Whale)

Gene Details

amyloid beta (A4) precursor protein-binding, family A, member 1

External Links

Gene match (Identifier: BACU011018, Minke Whale)

Protein Percentage 19.08%
cDNA percentage 33.1%
Ka/Ks Ratio 0.23977 (Ka = 1.4585, Ks = 6.083)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1323 bp    Location:52616..11699   Strand:-
>bmy_22357
ATGCGATGCTCACTGTGTTTTCCTCTGCTGTCTGTGTTCCAGTCCCCGTCTCCTGGCAGTTCCTCACCCCTGGGTGCAGAGTCTTCGAGCACACCCCTTCATCCCAGTGACCCCACGGAAGCCTCCACAAATAAAGAGTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACGTCGAAGTTCCTGGACCTTGTGACCCTGAGGACTTGATCGATGGAATCATTTTTGCTGCCAATTACCTTGGCTCCACCCAGCTTCTCTCAGACAAAACCCCCTCCAAAAACGTGCGCATGATGCAGGCCCAGGAAGCAGTAAGCAGGATCAAGGCTCCTGAAGGTGAGTCTCAGCCAATGACTGAAGTGGATCTCTTCATTTCTACCCAGAGAATCAAAGTATTGAACGCCGACACACAGGAGACGATGATGGACCACCCTCTGAGGACCATTTCCTACATTGCAGACATCGGGAACATCGTTGTGCTGATGGCCCGCAGGCGGATGCCCCGCTCCAACTCCCAGGAGAACGTGGAAGCCTCCCACCCATCCCAGGATGGAAAAAGGCAGTACAAGATGATCTGCCACGTCTTTGAATCTGAGGACGCTCAGCTGATTGCACAGTCCATCGGGCAGGCATTCAGCGTGGCATACCAGGAGTTCCTCAGGGCCAACGGGATTAACCCCGAAGATCTCAGCCAGAAGGAGTATAGTGACCTGCTCAACACCCAGGACATGTACAACGACGACCTGATCCACTTCTCCAAGTCGGAAAACTGCAAAGATGTCTTCATAGAGAAGCAGAAAGGGGAAATCCTAGGTGTGGTGATTGTGGAGTCTGGCTGGGGATCCATCTTGCCAACCGTGATCATAGCCAACATGATGCACGGAGGCCCAGCGGAGAAATCGGGGAAGCTGAATATTGGGGACCAGATCATGTCCATAAATGGCACCAGCCTGGTGGGCCTGCCTCTGTCGACCTGCCAGAGCATTATTAAGGGCTTGAAGAATCAGGCCCGGGTCAAGCTGAATATCGTGAGGTGTCCCCCAGTGACCACTGTGTTGATCAGGAGACCAGACCTTCGCTACCAGCTGGGGTTCAGTGTCCAGAACGGAATCATCTGCAGCCTCATGCGAGGGGGAATAGCGGAGAGAGGAGGCGTCCGCGTGGGACATCGCATCATTGAAATCAACGGGCAGAGCGTGGTCGCCACCCCACACGAGAAGATCGTGCACATCCTCTCCAATGCTGTTGGGGAGATTCACATGAAGACGATGCCGGCTGCCATGTACAGATTGCTGACGGCCCAGGAACAGCCTGTCTACATCTGA

Related Sequences

bmy_22357T0 Protein

Length: 441 aa      View alignments
>bmy_22357T0
MRCSLCFPLLSVFQSPSPGSSSPLGAESSSTPLHPSDPTEASTNKESRKSLASFPTYVEVPGPCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKAPEGESQPMTEVDLFISTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMARRRMPRSNSQENVEASHPSQDGKRQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKEYSDLLNTQDMYNDDLIHFSKSENCKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQARVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQEQPVYI*