Sequence details bmy_22472 (Coding sequence)

Part of scaffold_4177 (Scaffold)

For more information consult the page for scaffold_4177 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

HDHD1 ENSTTRG00000000305 (Bottlenosed dolphin)

Gene Details

haloacid dehalogenase-like hydrolase domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000287, Bottlenosed dolphin)

Protein Percentage 92.11%
cDNA percentage 94.74%
Ka/Ks Ratio 0.19378 (Ka = 0.0331, Ks = 0.1707)

HDHD1A ENSBTAG00000000207 (Cow)

Gene Details

pseudouridine-5'-monophosphatase

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000246, Cow)

Protein Percentage 87.28%
cDNA percentage 85.74%
Ka/Ks Ratio 0.06876 (Ka = 0.063, Ks = 0.9168)

Additional orthologs identified in other species via the OPTIC pipeline.

HDHD1 (Human)   Hdhd1a (Mouse)  

Genome Location

Sequence Coding sequence

Length: 576 bp    Location:2344..54114   Strand:+
Raw sequence 
>bmy_22472
ATGGCGGCGCCCTTGCCCCCGCTGCGTCCCGTCACCCACCTGCTTTTTGACCTGGACGGCCTCCTTCTGGACTGTGACAATTTGATTTTAGCCCAAGATGGGCCCTTCCGCCTTTCCACGTGGAAAGATACTGAACGGCTGTACTCAGTGGTGTTTGAGGCAGTCTGCGGTCGCTATGGGAAGAAATACAGCTGGGATGTGAAGTCCCTCGTTATGGGCAAGACGGCGTTGGAGGCGGCCCAGATCATCGTAGACACCCTGCAGCTCCCGACGTCCAGGGAGGAGCTGGTGGAAGCCAGCCAGGCGAAGCTGAAGGAGGTGTTCCCCAGCGCCGCGCTCATGCCAGGTGTGGAGAAGCTGATCCGCCACCTGCTGAAGCACGGTGTGCCCTGTGCCGTGGCCACCAGCTCAGGGACCGCATCCTTCCAGATGAAGACCAGCAGACACGAGGACTTCTTCAGCTTGTTCCATCACGTCGTCCTCGGCGATGACCCCGAAGTGAGGAGCGGGAAGCCAGAGCCAGACATCTTCCTGGCTTGCGCCCGGAGGTTTTCTCCCGCTCCTCCCGTGGAGAAG

Related Sequences

bmy_22472T0 Protein

Length: 192 aa      View alignments
>bmy_22472T0
MAAPLPPLRPVTHLLFDLDGLLLDCDNLILAQDGPFRLSTWKDTERLYSVVFEAVCGRYGKKYSWDVKSLVMGKTALEAAQIIVDTLQLPTSREELVEASQAKLKEVFPSAALMPGVEKLIRHLLKHGVPCAVATSSGTASFQMKTSRHEDFFSLFHHVVLGDDPEVRSGKPEPDIFLACARRFSPAPPVEK