Part of scaffold_4755 (Scaffold)

For more information consult the page for scaffold_4755 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

MCPH1 ENSTTRG00000017075 (Bottlenosed dolphin)

Gene Details

microcephalin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016188, Bottlenosed dolphin)

Protein Percentage 75.18%
cDNA percentage 82.67%
Ka/Ks Ratio 0.84285 (Ka = 0.1272, Ks = 0.1509)

MCPH1 ENSBTAG00000011032 (Cow)

Gene Details

microcephalin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000031555, Cow)

Protein Percentage 52.75%
cDNA percentage 70.45%
Ka/Ks Ratio 0.81759 (Ka = 0.3749, Ks = 0.4585)

MCPH1  (Minke Whale)

Gene Details

microcephalin 1

External Links

Gene match (Identifier: BACU013302, Minke Whale)

Protein Percentage 88.31%
cDNA percentage 91.85%
Ka/Ks Ratio 0.77558 (Ka = 0.0812, Ks = 0.1047)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1671 bp    Location:13482..6146   Strand:-
>bmy_22635
ATGGATGTTACAAAAGATATCAGGAATGTGTATGGAAGGGTTCTTTTCCTGTCTTACACAATCGCAATACGGTATTATTTTTTTTATGTCCTTTTTGTACAGCGCAAGTGTATGCAGCCCAAAGATTTTATTCCTAAAACACCAGAAAATGATAGAAGACTGCAAAAGAAGTTTGAGAAAATGGCTAAAGAGCTGCAACAGCAGAAAACCACTCTGGGTAATGATGCTCCTGTTCTCTTGTTCGAATCTAATGGCTCCCTGGTGTACAGTCCCCCAGTTAGAATCTGCAGTGGCCACCACAGTGCAGCGGGGAAGAGACTGCAGGCGATGCAGGCGAAACGGGAGGATCTTTCCCCCACCTCTTCCCAGATGGTTGAAAAGTCTGACGATAACACCGTTAACTCTCTGTGTGAAGCATCTTTGAACCTTTCACATGATACTTTGTGTTCAGAGGACTTCTTTGCTGGTGTTCTACACTTGTCTTTTGATGATCTTTGTGGGAGCTCTGGATGTGGGACTCAGCAGAGGAAATTGGGAGGATTCCTTGATGAAAGTAAAAGCGCTGCGTGTGCTTCCTCAGCTGTGTTGAAAACGAGCAGTGTCCGTCTGCCAGCATCTCCCGGTTCCCTTGGTCAGTTAACTCTTCACCAGTCCCCTGGCAGTCTTTCCAAGGGAGACATCCACCGGCAGAGGGGTGCTGCGGGCCGAGCCATCACCCCCGACGCGAAGCCAGCGTGGGAGCCAGCTCGGGGGGTGTTCGATGGGAAGAGGGGCCTGTCTCCTATGTCATCTGTAACAAAAGAGCCCCCCAGGGGCCCTTCATGTCCCCAGAGCTCCTCAGCCACGAGAAGAAGGGTGTCGGCGAACTCCAGGCCACCCCCGGAGGAGAGACTGAGGAAGAGGCGGTCCCTCGGGCGGCCCCCCGCGCCCCGGCTGCAGCCGGAGAACAGCCCGAAGTGCGCGAGCAGCTCTGCCGTTCAGACTCTGGGCCGCGGGGAGTCCTCGTACGATGATTACTTTTCTCCCAATAATCTCAAGGAGAGGGACTTGGAGAGCCTCCTTCCCGGGGTCCAGCCGCCCGCCGGCCCTGCCCTGCTCCACTGCACGAGGAGCCTTTCCAGGAGGGAGAGGACCAGCCTCCTGGAAAGGGCTGACTTTTCCTGCATCGGCAGAAACCCCAGGTCAGCCGATGGTACCGACTCAACAGTGAAGGCTGGCTTCCGTCTCCAGAAACCTGCAAACTACGGAGCTGATCCGGGCTTGAGCAGCGTGACTTCTAAGGAAACGCCTGCTGCCGAAGGGACCCCAGGGGACTGTCCCCGGGCCGAGGCTCAGAGACGGGGAGACGCCTGCCCGGGTGGGAGTGACTCTCCCCATATCCTCGACGGACTCACTCCTCAGAAGGGGCGTCGAGGTGATTTTACTCCTTTGAAAGGAAGCAATAAAGAAATGAAAGGATGGATTGACGTAAAAAGCACACAGAAAGAAGATACTCCTTCTAAAATGGCGAATTCCCCTGAAGGTGAAGCACGAAGTGATTATAAGCTAAACTGTGTAGGCGACTGTGATGTGGAAAAGTCTGCAGAGGCGAGGGAAGAGTTACCCCGAGGATGCAGCGAAAGTATGTGCGTCTCCTGTTACCAGTCTCTCCACTATAGGAATATGCAGTAG

Related Sequences

bmy_22635T0 Protein

Length: 557 aa      View alignments
>bmy_22635T0
MDVTKDIRNVYGRVLFLSYTIAIRYYFFYVLFVQRKCMQPKDFIPKTPENDRRLQKKFEKMAKELQQQKTTLGNDAPVLLFESNGSLVYSPPVRICSGHHSAAGKRLQAMQAKREDLSPTSSQMVEKSDDNTVNSLCEASLNLSHDTLCSEDFFAGVLHLSFDDLCGSSGCGTQQRKLGGFLDESKSAACASSAVLKTSSVRLPASPGSLGQLTLHQSPGSLSKGDIHRQRGAAGRAITPDAKPAWEPARGVFDGKRGLSPMSSVTKEPPRGPSCPQSSSATRRRVSANSRPPPEERLRKRRSLGRPPAPRLQPENSPKCASSSAVQTLGRGESSYDDYFSPNNLKERDLESLLPGVQPPAGPALLHCTRSLSRRERTSLLERADFSCIGRNPRSADGTDSTVKAGFRLQKPANYGADPGLSSVTSKETPAAEGTPGDCPRAEAQRRGDACPGGSDSPHILDGLTPQKGRRGDFTPLKGSNKEMKGWIDVKSTQKEDTPSKMANSPEGEARSDYKLNCVGDCDVEKSAEAREELPRGCSESMCVSCYQSLHYRNMQ*