Part of scaffold_1 (Scaffold)

For more information consult the page for scaffold_1 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SLC6A4 ENSTTRG00000016339 (Bottlenosed dolphin)

Gene Details

solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015487, Bottlenosed dolphin)

Protein Percentage 91.9%
cDNA percentage 92.75%
Ka/Ks Ratio 0.34115 (Ka = 0.0142, Ks = 0.0417)

SLC6A4 ENSBTAG00000019349 (Cow)

Gene Details

sodium-dependent serotonin transporter

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025774, Cow)

Protein Percentage 92.83%
cDNA percentage 92.2%
Ka/Ks Ratio 0.16732 (Ka = 0.039, Ks = 0.2333)

SLC6A4  (Minke Whale)

Gene Details

solute carrier family 6 (neurotransmitter transporter), member 4

External Links

Gene match (Identifier: BACU010479, Minke Whale)

Protein Percentage 97.52%
cDNA percentage 97.79%
Ka/Ks Ratio 0.55446 (Ka = 0.0193, Ks = 0.0348)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1893 bp    Location:1907590..1885642   Strand:-
>bmy_00144
ATGGAGACCACACCCTTAAATTCCCAGAAGGAGCTATCAGCATATAAGGATGGAGAAGATTGTCAAGGAAATGGTGTTCTACAGAAGGGTGTCCCTGCCCCTGGGGATAAGGCAGAGACCGGCCAAATCTCAAATGGGTACTCAGCGGTTCCAAGCCCCGGTGCAGGAGACGACACTCAGCATTCCATCCCGGCTGCCACCACCGCCCTAGTGGCTGAGGTTCATCCAGGGGAACGGGAGACCTGGGGCAAGAAGGTGGATTTCCTCCTCTCCGTCATTGGCTACGCTGTGGACCTGGGCAATGTCTGGCGCTTTCCCTACATCTGTTACCAGAATGGAGGGGGGGCATTCCTCCTCCCCTACACTATCATGGCCGTTTTCGGGGGGATCCCGCTCTTCTACATGGAGCTCGCACTGGGCCAGTACCACCGAAATGGATGCATTTCGATATGGAGGAAAATCTGCCCGATTTTCAAAGGGATCGGTTACGCCATCTGCATCATTGCCTTTTACATCGCCTCCTACTACAACACCATCATGGCCTGGGCGCTCTACTACCTCATCTCCTCTTTTGCGGCCCAGCTGCCCTGGACCAGCTGTAAGAACTCCTGGAACACTGGCAACTGCACTAACTACTTCTCCGAGGACAACATCACCTGGACACTCCACTCAACATCCCCTGCAGAAGAATTTTATACGCGCCACGTCCTGCAGATCCACCGGTCAAAGGGGCTCCAGGACCTGGGGGGCATCAGCTGGCAGCTTGCCCTCTGCATCATGCTGATCTTCACTATTATCTACTTTAGCATCTGGAAAGGTGTCAAAACATCTGGCAAGGTGGTTTGGGTAACAGCCACCTTCCCTTACATCATCCTTTCGATCCTGCTGGTGAGGGGGGCCACCCTCCCCGGAGCCTGGAGGGGAGTTCTCTTCTATTTGAAACCCAACTGGCAGAAACTCCTGGAGACAGGGGTGTGGGTGGATGCGGCCGCTCAGATCTTCTTCTCTCTCGGTCCTGGCTTTGGGGTCCTGCTGGCTTTTGCGAGCTACAACAAATTCAACAACAACTGTTACCAAGACGCCTTGGTGACCAGTGTGGTGAATTGCGTGACGAGCTTCGTTTCAGGATTTGTCATCTTCACAGTGCTGGGGTATATGGCTGAGATGAGGAACGAAGATGTGTCTGAGGTGGCCAAAGATGCAGGCCCCAGCCTGCTCTTCATCACATATGCGGAAGCCATAGCCAACATGCCGGCATCCACGTTCTTTTCCATCATCTTCTTCCTGATGTTAATCACACTGGGCTTGGACAGCACATTTGCAGGCTTGGAGGGGGTGATCACAGCCGTGCTGGATGAGTTTCCACACATCTGGTCCAAGCGCCGGGAGTGGTTTGTGCTCAGCGTGGTCATTACCTGCTTCTTTGGATCCCTGATCACCCTGACTTTTGGAGGGGCCTACGTGGTGAAGCTGCTGGAGGAGTTTGCCACGGGACCCGCAGTGCTCACTGTTGCCCTGATAGAAGCAATTGCTGTGTGTTGGTTCTATGGCATCAATCAGTTCTGCAGTGATGTGAAGGAAATGCTTGGCTTCAGCCCTGGATGGTTTTGGAGGATCTGCTGGGTAGCCATCAGCCCTCTGTTTCTCCTGTTCATCATTTGCAGTTTTTTGATGAGCCCACCACAGCTACGACTTTTTCAGTATAATTATCCTCAGTGGAGCATCATCCTGGGTTACTGCATAGGAACCTCATCTTTCATCTGCATCCCGATGTATATAACTTATCGGCTGATCGTCACTCCAGGGACACTTAAGGAGCGTCTTATTAAAGGTATCACTCCAGAAACACCGACAGAAATTCCCTGTGGGGATATCCACTTGAATGCTGTGTAA

Related Sequences

bmy_00144T0 Protein

Length: 631 aa      View alignments
>bmy_00144T0
METTPLNSQKELSAYKDGEDCQGNGVLQKGVPAPGDKAETGQISNGYSAVPSPGAGDDTQHSIPAATTALVAEVHPGERETWGKKVDFLLSVIGYAVDLGNVWRFPYICYQNGGGAFLLPYTIMAVFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIAFYIASYYNTIMAWALYYLISSFAAQLPWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRHVLQIHRSKGLQDLGGISWQLALCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIILSILLVRGATLPGAWRGVLFYLKPNWQKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALVTSVVNCVTSFVSGFVIFTVLGYMAEMRNEDVSEVAKDAGPSLLFITYAEAIANMPASTFFSIIFFLMLITLGLDSTFAGLEGVITAVLDEFPHIWSKRREWFVLSVVITCFFGSLITLTFGGAYVVKLLEEFATGPAVLTVALIEAIAVCWFYGINQFCSDVKEMLGFSPGWFWRICWVAISPLFLLFIICSFLMSPPQLRLFQYNYPQWSIILGYCIGTSSFICIPMYITYRLIVTPGTLKERLIKGITPETPTEIPCGDIHLNAV*