Sequence details bmy_03507 (Coding sequence)

Part of scaffold_101 (Scaffold)

For more information consult the page for scaffold_101 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IFT43 ENSTTRG00000015337 (Bottlenosed dolphin)

Gene Details

intraflagellar transport 43 homolog (Chlamydomonas)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014536, Bottlenosed dolphin)

Protein Percentage 79.14%
cDNA percentage 79.86%
Ka/Ks Ratio 0.41998 (Ka = 0.056, Ks = 0.1334)

BT.18569 ENSBTAG00000012005 (Cow)

Gene Details

intraflagellar transport protein 43 homolog

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000015927, Cow)

Protein Percentage 78.42%
cDNA percentage 81.53%
Ka/Ks Ratio 0.27784 (Ka = 0.1504, Ks = 0.5412)

IFT43  (Minke Whale)

Gene Details

intraflagellar transport 43 homolog (Chlamydomonas)

External Links

Gene match (Identifier: BACU010828, Minke Whale)

Protein Percentage 83.45%
cDNA percentage 84.65%
Ka/Ks Ratio 0.47546 (Ka = 0.1425, Ks = 0.2998)

Additional orthologs identified in other species via the OPTIC pipeline.

IFT43 (Human)   Ift43 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 420 bp    Location:1635487..1632984   Strand:-
Raw sequence 
>bmy_03507
ATGTGGAAGGTGATAAGTAACCAGTGGAGAAGCAGGCAAGATCCCCCATTCGTGCCGCTGACATTTTTGGCTCCTCCTCTCATYGCAGATATTCCTGTTATTCCGGACCTGGAAGAAGTACAGGAGGAAGACTTTGTTTTGCAGGTGGCGGCCCCTCCCAGCATCCAGGTCAACCGGGTGATGACCTACCGTGACCTGGACAATGACCTCATGAAGTACGCAGCCTTTCAGACCTTGGATGGAGAGATCGACCTGAAGCTCCTCACTAAAGTCCTGGCGCCGGAGCATGAGGTTCGAGAGGACGACGTCAGCTGGGACTGGGACCGTCTGTACACTGAGGTGTCCTCAGAGCTCCTCAGCGAGTGGGACGTGCTGCAGGCAGACAAGGAGGACCCCGTGGGACAGCCCTCGCACACCTGA

Related Sequences

bmy_03507T0 Protein

Length: 140 aa      View alignments
>bmy_03507T0
MWKVISNQWRSRQDPPFVPLTFLAPPLIADIPVIPDLEEVQEEDFVLQVAAPPSIQVNRVMTYRDLDNDLMKYAAFQTLDGEIDLKLLTKVLAPEHEVREDDVSWDWDRLYTEVSSELLSEWDVLQADKEDPVGQPSHT*