Sequence detailsbmy_03507 (Coding sequence)

Part of scaffold_101 (SequenceType object (1))

For more information consult the page for scaffold_101 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IFT43ENSTTRG00000015337 (Bottlenosed dolphin)

Gene Details

intraflagellar transport 43 homolog (Chlamydomonas)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000014536, Bottlenosed dolphin)

Protein Percentage 79.14%
cDNA percentage 79.86%
Ka/Ks Ratio 0.41998 (Ka = 0.056, Ks = 0.1334)

BT.18569ENSBTAG00000012005 (Cow)

Gene Details

intraflagellar transport protein 43 homolog

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000015927, Cow)

Protein Percentage 78.42%
cDNA percentage 81.53%
Ka/Ks Ratio 0.27784 (Ka = 0.1504, Ks = 0.5412)

IFT43 (Minke Whale)

Gene Details

intraflagellar transport 43 homolog (Chlamydomonas)

External Links

Gene match (Identifier: BACU010828, Minke Whale)

Protein Percentage 83.45%
cDNA percentage 84.65%
Ka/Ks Ratio 0.47546 (Ka = 0.1425, Ks = 0.2998)

Additional orthologs identified in other species via the OPTIC pipeline.

IFT43 (Human)   Ift43 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 420 bp    Location:1635487..1632984   Strand:-
Raw sequence 
>bmy_03507
ATGTGGAAGGTGATAAGTAACCAGTGGAGAAGCAGGCAAGATCCCCCATTCGTGCCGCTGACATTTTTGGCTCCTCCTCTCATYGCAGATATTCCTGTTATTCCGGACCTGGAAGAAGTACAGGAGGAAGACTTTGTTTTGCAGGTGGCGGCCCCTCCCAGCATCCAGGTCAACCGGGTGATGACCTACCGTGACCTGGACAATGACCTCATGAAGTACGCAGCCTTTCAGACCTTGGATGGAGAGATCGACCTGAAGCTCCTCACTAAAGTCCTGGCGCCGGAGCATGAGGTTCGAGAGGACGACGTCAGCTGGGACTGGGACCGTCTGTACACTGAGGTGTCCTCAGAGCTCCTCAGCGAGTGGGACGTGCTGCAGGCAGACAAGGAGGACCCCGTGGGACAGCCCTCGCACACCTGA

Related Sequences

bmy_03507T0 SequenceType object (3)

Length: 140 aa      View alignments
>bmy_03507T0
MWKVISNQWRSRQDPPFVPLTFLAPPLIADIPVIPDLEEVQEEDFVLQVAAPPSIQVNRVMTYRDLDNDLMKYAAFQTLDGEIDLKLLTKVLAPEHEVREDDVSWDWDRLYTEVSSELLSEWDVLQADKEDPVGQPSHT*