Part of scaffold_123 (Scaffold)

For more information consult the page for scaffold_123 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USP47 ENSTTRG00000010536 (Bottlenosed dolphin)

Gene Details

ubiquitin specific peptidase 47

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009994, Bottlenosed dolphin)

Protein Percentage 81.48%
cDNA percentage 81.34%
Ka/Ks Ratio 0.22789 (Ka = 0.0108, Ks = 0.0474)

BT.44956 ENSBTAG00000010919 (Cow)

Gene Details

ubiquitin specific peptidase 47

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014505, Cow)

Protein Percentage 97.46%
cDNA percentage 95.6%
Ka/Ks Ratio 0.08684 (Ka = 0.0134, Ks = 0.1548)

USP47  (Minke Whale)

Gene Details

ubiquitin specific peptidase 47

External Links

Gene match (Identifier: BACU005651, Minke Whale)

Protein Percentage 95.42%
cDNA percentage 95.86%
Ka/Ks Ratio 0.37515 (Ka = 0.0329, Ks = 0.0878)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3690 bp    Location:1820071..1693550   Strand:-
>bmy_04022
ATGGTGCCCGGCGAGGAGAACCAACTGGTCCCGAAGGAGGTAGAAAATGCTGCTGAAGAACCAAGAGTCTTATGTATAATACAAGATACTACTAATTCAAAGACAGTGAACGAACGGATCACTTTAAATTTACCAGCTTCYACTCCTCTCAGAAAGCTCTTTGAAGATGTGGCCAACAAAGTAGGCTACATAAATGGAACCTTTGATTTGGTGTGGGGGAATGGAATCAATTCTGCTGATATGGCTCCACTGGATCATACCAGTGACAAGTCTCTTCTTGATGCTAATTTTGAGCCAGGAAAGAAGAACTTTCTGCATTTGACAGATAAAGATGCTTGGCAGCAGCATGATGTACAGGAACTGTGCAGAGTCATGTTTGATGCTTTGGAACAGAAATGGAAACAAACAGAACAGGCTGATCTTATAAATGAACTGTATCAAGGCAAGCTGAAGGACTACGTGAGATGTCTGGAATGTGGTTATGAGGGCTGGAGAATCGACACGTATCTTGATATTCCATTGGTCATCCGACCTTATGGGTCCAGCCAAGCATTTGCTAGTGTGGTGTGTACCTTTCAGCTGACTGCTTGTGAGGAAGCATTGCATGCATTTATTCAGCCAGAGATCCTGGATGGCCCAAATCAATATTTTTGTGAACGTTGTAAGAAGAAGTGTGATGCACGAAAGGGTCTTCGGTTTTTGCATTTCCCTTATCTGCTGACCTTACAACTGAAAAGGTTTGATTTTGATTATACAACAATGCACAGGATTAAATTGAATGATCGGATGACATTTCCCGAGGAACTAGACATGAGTACATTTATTGATGTTGAAGATGAGAAATCTCCTCAGACTGAAAGTTGCACTGACAGTGGAGCAGAAAACGAAGGCAGTTGTCACAGTGATCAAATGAGTAATGATTTCTCCAATGATGATGGTGTTGATGAAGGGATCTGCCTTGAAAGCAACAGTGGAACTGAAAAGATTCCAAAACCTGGGCTTGAAAAGAATTCTTTGATCTATGAGCTCTTCTCCGTTATGGTTCATTCAGGGAGTGCTGCTGGTGGTCATTACTATGCTTGTATAAAGTCATTCAATGATGAGCAGTGGTACAGCTTCAATGATCAACATGTCAGCAGGATAACACAAGAGGACATTAAGAAAACACATGGTGGATCTTCAGGAAGCAGAGGATATTACTCCAGTGCTTTTGCAAGCTCCACAAATGCATATATGCTGATATATAGACTGAAGGACCCAGCAAGAAATGCAAAATTTCTAGAAGTAGATGAATATCCAGAACATATTAAAAATTTGGTGCAGAGAGAGAGAGAATTGGAAGAACAAGAAAAGAGGCAACGAGAAATTGAGCGCAATACATGCAAGATAAAATTATTCTGTTTACATCCTGTGAAACAAGTGATGATGGAAAATAAATTGGAGGTTCATAAGGATAAGACATTAAAGGAAGCAGTAGAAATGGCTTATAAGATGATGGATTTAGAAGAGGTAATACCTATGGATTGCTGTCGTCTTGTTAAATATGATGAGTTTCATGATTATCTTGAACGATCATATGAAGGAGAAGAAGATACGCCAATGGGACTTTTACTGGGTGGAGTCAAGTCAACATACATGTTTGATCTGCTGTTGGAGACAAGAAGACCCGATCAGGTTTTCCAGTCTTACAAACCCGGAGAAGTGATGGTGAAGGTTCATGTTGTTGATCTAAAGGCAGAATCTGTAGCTGCTCCTATCACTGTTCGAGCTTACTTAAATCAAACAGTTACAGAGTTCAAACAGCTTATTTCAAAGGCCATCTATTTACCTGCTGAAACAATGAGAATAGTGCTGGAACGCTGCTACAATGATTTGCGTCTTCTCACTGTGCCCAGTAAAACCCTGAAAGCTGAAGGGTTTTTTAGAAGTAACAAGGTGTTCGTTGAAAGTTCTGAGACTTTGGATTACCAGATGGCCTTTACAGACTCTCATTTATGGAAACTCCTGGATCGGCATGCAAATACAATCAGATTATTTGTTTTGTTACCTGAACAATCTCCAGGATCTTATTCCAAAAGGACAGCATACCAGAAAGCTGGGGGTGACTCTGGTAATGTGGATGATGACTGTGAAAGAGTCAAAGGACCTGCAGGGGGTCTAAAGTCTGTGGAAGCTATTCTAGAAGAAAGCACTGAAAAACTCAAAAGCTTGTCACTGCAACAGCAGCAGGAGGGAGATAATGGGGACAGCAGCAAAAGTACTGAGACAAGTGACTTTGAAAACATTGAATCACCTCTCAATGAGAGGGACTCTTCAGCCTCAGTGGATAATAGAGAACTTGAACAGCATATTCAGACTTCCGATCCTGAAAATTTTCAGTCTGAAGAACGATCAGATTCAGATGTGAATAATGACAGGAGTACAAGTTCAGTGGACAGTGATATCCTTAGCTCAAGTCATAGCAGTGATACTTTGTGCAATGCAGATAATGCTCAAATCCCTTTGGCTAATGGACTTGACTCTCATAGCATCACGAGTAGTAGAAGAACTAAAGCGAATGAAGGGAAAAAGGAGACATGGGATACAGCAGAAGAAGACTCCGGAACGGACAGTGAATATGATGAGAGTGGCAAGAGTAGGGGAGAAATACAGTACATGTATTTCAAAGCAGAACCCTATGCTGCAGATGAAAGTTCTGGGGAAGGACATAAATGGTTGATGGTGCATGTTGATAAAAGAATTACTCTGGCTGCTTTCAAACAACATTTAGAGCCCTTTGTTGGAGTTTTGTCCTCTCACTTCAAGGTCTTTCGCGTGTACGCCAGCAATCAAGAGTTTGAGAGCGTCCGGCTGAATGAGACACTTTCATCATTTTCAGATGACAATAAGATTACAATTAGACTGGGGAGAGCACTTAAAAAAGGAGAATACAGAGTTAAAGTGTACCAGCTTCTAGTCAATGAACAAGAGCCGTGCAAGTTTCTGCTAGATGCTGTGTTTGCTAAAGGAATGACTGTACGGCAATCAAAAGAGGAGTTAATTCCTCAGCTCAGGGAGCAATGTGGTTTAGAGCTCAGTATTGACAGGTTTCGTCTAAGGAAAAAAACATGGAAGAATCCTGGCACTGTCTTTTTGGATTATCATATTTATGAAGAAGATATTAATATTTCCAGCAACTGGGAGGTTTTCCTTGAAGTTCTTGATGGGGCAGAGAAGATGAAATCCATGTCACAACTTGCAGTTTTGTCAAGACGGTGGAGGCCTTCAGAGATGAAGTTGGATCCCTTCCAGGAGGTTGTGTTGGAAAGCAGTAGTGTTGATGAGTTGCGAGAGAAGCTTTGTGAAATCAGTGGAATTCCTTTAGAAGATATTGAATTTGCCAAGGGAAGAGGAACTTTTCCCTGTGATATTTCTGTCCTTGATATTCATCAGGATTTGGACTGGAATCCTAAAGTTTCTACCCTGAATGTCTGGCCTCTTTATATCTGTGATGATGGTGCAGTCATATTTTATAGGGATAAAACAGAAGAATTAATGGAGTTGACAGATGAGCAAAGAAATGAACTGATGAAAAAAGAAAGCAGTCGACTCCAGAAGACGGGACATCGTGTAACGTACTCACCTCGGAAAGAAAAAGCACTAAAAATATATCTGGATGGAGCACCAAATAAAGATCTGACTCAAGACTGA

Related Sequences

bmy_04022T0 Protein

Length: 1230 aa      View alignments
>bmy_04022T0
MVPGEENQLVPKEVENAAEEPRVLCIIQDTTNSKTVNERITLNLPASTPLRKLFEDVANKVGYINGTFDLVWGNGINSADMAPLDHTSDKSLLDANFEPGKKNFLHLTDKDAWQQHDVQELCRVMFDALEQKWKQTEQADLINELYQGKLKDYVRCLECGYEGWRIDTYLDIPLVIRPYGSSQAFASVVCTFQLTACEEALHAFIQPEILDGPNQYFCERCKKKCDARKGLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSTFIDVEDEKSPQTESCTDSGAENEGSCHSDQMSNDFSNDDGVDEGICLESNSGTEKIPKPGLEKNSLIYELFSVMVHSGSAAGGHYYACIKSFNDEQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYSSAFASSTNAYMLIYRLKDPARNAKFLEVDEYPEHIKNLVQRERELEEQEKRQREIERNTCKIKLFCLHPVKQVMMENKLEVHKDKTLKEAVEMAYKMMDLEEVIPMDCCRLVKYDEFHDYLERSYEGEEDTPMGLLLGGVKSTYMFDLLLETRRPDQVFQSYKPGEVMVKVHVVDLKAESVAAPITVRAYLNQTVTEFKQLISKAIYLPAETMRIVLERCYNDLRLLTVPSKTLKAEGFFRSNKVFVESSETLDYQMAFTDSHLWKLLDRHANTIRLFVLLPEQSPGSYSKRTAYQKAGGDSGNVDDDCERVKGPAGGLKSVEAILEESTEKLKSLSLQQQQEGDNGDSSKSTETSDFENIESPLNERDSSASVDNRELEQHIQTSDPENFQSEERSDSDVNNDRSTSSVDSDILSSSHSSDTLCNADNAQIPLANGLDSHSITSSRRTKANEGKKETWDTAEEDSGTDSEYDESGKSRGEIQYMYFKAEPYAADESSGEGHKWLMVHVDKRITLAAFKQHLEPFVGVLSSHFKVFRVYASNQEFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNEQEPCKFLLDAVFAKGMTVRQSKEELIPQLREQCGLELSIDRFRLRKKTWKNPGTVFLDYHIYEEDINISSNWEVFLEVLDGAEKMKSMSQLAVLSRRWRPSEMKLDPFQEVVLESSSVDELREKLCEISGIPLEDIEFAKGRGTFPCDISVLDIHQDLDWNPKVSTLNVWPLYICDDGAVIFYRDKTEELMELTDEQRNELMKKESSRLQKTGHRVTYSPRKEKALKIYLDGAPNKDLTQD*