Sequence detailsbmy_04944 (Coding sequence)

Part of scaffold_172 (SequenceType object (1))

For more information consult the page for scaffold_172 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PRDM1ENSTTRG00000012894 (Bottlenosed dolphin)

Gene Details

PR domain containing 1, with ZNF domain

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012228, Bottlenosed dolphin)

Protein Percentage 96.7%
cDNA percentage 96.53%
Ka/Ks Ratio 0.10651 (Ka = 0.0045, Ks = 0.0419)

PRDM1ENSBTAG00000000816 (Cow)

Gene Details

PR domain zinc finger protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000001081, Cow)

Protein Percentage 92.91%
cDNA percentage 93.64%
Ka/Ks Ratio 0.18605 (Ka = 0.037, Ks = 0.1991)

PRDM1 (Minke Whale)

Gene Details

PR domain containing 1, with ZNF domain

External Links

Gene match (Identifier: BACU020016, Minke Whale)

Protein Percentage 99.22%
cDNA percentage 99.43%
Ka/Ks Ratio 0.27 (Ka = 0.0035, Ks = 0.0128)

Additional orthologs identified in other species via the OPTIC pipeline.

PRDM1 (Human)   Prdm1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2463 bp    Location:801127..821168   Strand:+
Raw sequence 
>bmy_04944
ATGGGGATTAAAGGCCTTTCCTTTCTCTTCCAGGCTGCCCCTAAGTGTAACTCCAGTGCTGTGAAGGTTCCAGGGTTGGCAGAGGGGACTGAGGGGACCATGAAAATGGACATGGAGGACGCAGACATGACTCTGTGGACAGAGGCTGAGTTTGAGGAGAAGTGTACATACATTGTGAACGACCACCCCTGGGATTCTGGCACCGAAGGAGGCACTTCGGTTCAGGCAGAGGCATCCTTACCGAGGAATCTGCTTTTCAAATATGCCACAAACAGCAAAGAGGTTATTGGAGTGGTGAGTAAAGAATACATACCAAAGGGGACACGTTTTGGACCTCTAATAGGTGAAATCTACACCAATGATACAGTTCCCAAGAACGCCAACAGGAAATATTTTTGGCGGATCTATTCCCGAGGGGAGCTTCACCACTTCATCGATGGCTTTAATGAGGAGAAGAGCAACTGGCTGCGCTACGTGAACCCAGCACACTCTGCCCGGGAGCAGAACCTGGCTGCCTGTCAGAACGGCATGAACATCTACTTCTACACCATTAAGCCCATCCCCGCCAACCAGGAGCTTCTTGTGTGGTATTGCCGGGACTTTGCGGAAAGGCTTCACTACCCTTATCCTGGAGAGCTGACAATGATGAATCTCACGCAAACCCAGAGCCATCCAAAGCAGCAGAGCACTGAGAAACATGAACTTTGCCCAAAGAATGTCCCGAAGAGAGAGTACAGCGTGAAAGAAATACTAAAATTGGACTCCCACCCCTCCAAAGGGAAGGACTTCTACCGCTCCAACATTTCACCCCTCACTTCGGAAAAGGACGCGGATGACTTCCGGAAAAATGGGAGCCCCGAGATGCCCTTCTACCCGCGGGTGGTGTACCCGATCCGGGCCCCTCTCCCGGAAGACTTTCTGAAAGCTTCCCTGGCCTACGGGATGGAGCGGCCGCCCTACATCGCGCACTCCCCCATCCCGTCCTCCACGACGCCCAGCCCCTCGGCGCGCAGCAGCCCGGACCGGAGCCTGCACGGCAGCCCCGGGAACACCGTGTCGCCGCGGGCCCCCGGCTCCCAGGAGCACCGCGACCCTTACGCCTACTTGAACGCTCCGTACGCCGCCGCCGCCGCCGAGGGGCTGGGCCCCTACCCCGGCTACGCCCCGCCCCCGCACCTGCCGCCCGCCTTCATCCCTTCCTACAACGCGCACTACCCGAAGTTCCTGCTGCCCCCCTACGGCATGAACTGCAACGGCCTGGGCGCCGTGGGCAACATCAACGGCCTCGGCAGCTTCGGCCTCTTCCCGAGGCTGTACCCCGTGTACGGCGGCCTCCTGGGCGGGGGCGGCCTGCCTCCCCCGATGCTGGCGCCCGCCTCCCTCCCCAGCTCGCTGCCCTCGGAGGGGGCGCGCCGCCTGCTGCAGCCCGAGCACCCCCGGGAGGTGCTGGTGCCCGCGCCGCACAGTGCCTTCTCCCTCCCCGGGGCGGCCGCCAGCCTGAAGGACAAGGCCTGCAGCCCCACCAGCGGGTCCCCGACGGCCGGCACCGCCGCCACGGCCGAGCACGTGGTGCAGCCCAAAGCTACCTCAGCGGCCGCGGCGGCCCCCGGCGGCGGCGACGAGGCCGTGAATCTCATCAAGAACAAAAGGAACATGACCGGCTACAAGACGCTCCCCTACCCCCTGAAGAAGCAGAACGGCAAGATCAAGTACGAGTGCAACGTCTGCGCCAAGACTTTCGGCCAGCTCTCAAACCTGAAGGTCCACCTCAGAGTGCACAGCGGAGAACGGCCTTTCAAATGCCAGACTTGCAACAAGGGCTTCACTCAGCTCGCCCACCTGCAGAAACACTACCTGGTACACACGGGAGAGAAGCCACATGAATGCCAGGTTTGCCACAAGCGATTTAGCAGCACCAGCAATCTCAAGACCCACCTGCGACTCCACTCCGGAGAGAAACCTTACCAGTGCAAGGTGTGCCCCGCCAAGTTCACCCAGTTTGTGCACCTGAAACTCCACAAGCGCCTACACACCCGGGAGCGGCCCCACAAGTGTGCCCACTGCCACAAGAGCTACATCCATCTCTGCAGCCTCAAGGTCCACCTGAAGGGGTATTGTCCTGTGGCCCCAGCCACGGGGCTGCCTCTGGAGGACCTGACCAGAATCAACGAAGAAATCGAGAAGTTTGACATCAGCGACAATGCCGACCGGCTGGAGGACATGGAGGACAACGTTGACGTGACCTCTGTGGTGGAGAAGGAGATTCTGGCCGTGGTCAGAAAAGAGAAAGAAGAAACTGGCCTGAAAGTGTCTTTGCAAAGAAACATGGGGAATGGACTGCTCTCAGGATGTAACCTCTACGAGTCAACAGACCCGTCCCTCCTGAAGTTGCCTCACAGCAACCCACTACCTCTGGGACCTGTAAAGGTCAAACAAGAAACAATCGAACCAATGGATCCTTAA

Related Sequences

bmy_04944T0 SequenceType object (3)

Length: 821 aa      View alignments
>bmy_04944T0
MGIKGLSFLFQAAPKCNSSAVKVPGLAEGTEGTMKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGTEGGTSVQAEASLPRNLLFKYATNSKEVIGVVSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWLRYVNPAHSAREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTMMNLTQTQSHPKQQSTEKHELCPKNVPKREYSVKEILKLDSHPSKGKDFYRSNISPLTSEKDADDFRKNGSPEMPFYPRVVYPIRAPLPEDFLKASLAYGMERPPYIAHSPIPSSTTPSPSARSSPDRSLHGSPGNTVSPRAPGSQEHRDPYAYLNAPYAAAAAEGLGPYPGYAPPPHLPPAFIPSYNAHYPKFLLPPYGMNCNGLGAVGNINGLGSFGLFPRLYPVYGGLLGGGGLPPPMLAPASLPSSLPSEGARRLLQPEHPREVLVPAPHSAFSLPGAAASLKDKACSPTSGSPTAGTAATAEHVVQPKATSAAAAAPGGGDEAVNLIKNKRNMTGYKTLPYPLKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCAHCHKSYIHLCSLKVHLKGYCPVAPATGLPLEDLTRINEEIEKFDISDNADRLEDMEDNVDVTSVVEKEILAVVRKEKEETGLKVSLQRNMGNGLLSGCNLYESTDPSLLKLPHSNPLPLGPVKVKQETIEPMDP*