Part of scaffold_684 (Scaffold)

For more information consult the page for scaffold_684 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM25 ENSTTRG00000008104 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 25

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007665, Bottlenosed dolphin)

Protein Percentage 63.08%
cDNA percentage 72.93%
Ka/Ks Ratio 0.56389 (Ka = 0.2634, Ks = 0.4671)

TRIM25 ENSBTAG00000009948 (Cow)

Gene Details

E3 ubiquitin/ISG15 ligase TRIM25

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000013121, Cow)

Protein Percentage 83.67%
cDNA percentage 87.24%
Ka/Ks Ratio 0.13633 (Ka = 0.079, Ks = 0.5796)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1668 bp    Location:67059..85038   Strand:+
>bmy_11959
ATGGCGGAGCTGTGCCCCCTGGCCGAGGAGCTGTCGTGCTCCATCTGCTTGGAGCCCTTCAAGGGGCCGGTCACCACGCCCTGCGGCCACAACTTTTGCGGGTCGTGCCTGGACCAGACGTGGGCCGTCCAGGACCCGCCGTACCTGTGCCCACAGTGCCGCACCGGCTTCCAGACGCGGCCACAGCTGCACAAGAACACGGTGTTGTGTGCGGTGGTGGAGCAGTTCCTGCAGGCCGAGCAGGCCCGTCCCGAGGTCCCCGACGACTGGATGCCGCCCACCCGGGCCGCCGCCCCCAACCCGGCCGGCCAGGTGGCTTGCGACCACTGCCTGCAGGCGACCGCCGTCAAGACGTGCCTGGTGTGCATGGCCTCCTTCTGCCAGGAGCACCTGCGGCCGCATCTCGACAGCCCCGCCTTTCGGGACCACCCGCTGCAGTCGCCCATCCGTGAGCTGATGCGCCGCAAGTGCCCCCAGCACAACCGGCTGCGGGACTTCTTCTGTCCTGAGCACGGCGAGTGCATCTGCCACATCTGCGTGGTGGAGCACAAGACCTGCTCGCCTGCGCCCCTGAGTCAGGCCAGCACTGACCTGGAGAACAAGTTGAGGCATAAACTGACTGTCACGTACAGTCAGATCAACGGGGCGTCGAGAGCACTGGAGGACGTGAGAGCCAGGCAGCAGGACGTGCGGAAAGCAGCAAAACTGCAAGGAATCACGACGAAGCCAGTCTACGTCCCCAAGGTGGAGCTGAATCACGAGCTGATAAAGGGTGTCTGTCAGGGCACCTCTGAGCTCAAAAATGAGCTGAAGCAGTACCTCAAACAGCCCCAGGACAAGAAGCCTGAAGAGCTCATCATCCCAGGGGGCCCTGGAGGACATGGCCTGCTGCACATTCCGAAACCCCCACGGCCTGTGAAGAAGATCCCAAAAGAAGAAAAGAAACCCAAGAAACCTCCCCCAACCATTGCCTTACCCAGCAAGCTTCCCTCCTTTGGAGCCCCAGAACATTTAGTGGATCTCAAGCAAACTGGCCAGGAGGCTGAGGTCAAAGTCCCCACCGTACCGCCGACCCCGGTGTCTCTCAAGGCCAAGGTGCTGGAGACCTTCCTAGCCAAGTCCAGGCCTGAGCTCCTGGAGTATACTGTGAAAGTCATCCTGGACTACAACACTGCCCACAACAAGGTGGCTCTGTCCGAGAACTACACCGTAGCTTCTGTGGCTGACGCGTCCCACAACTACCGGCCACATCCCCAGAGGTTCACGTACTGCTCTCAGGTGCTGGGCCTGCACTGCTACAAGAAGGGGATCCACTACTGGGAGGTGGAGCTGCAGAAGAACAACTTCTGTGGGGTGGGCATCTGCTACGGCAGCATGGAACGGCAGGGCCCCGAGAGCCGGCTCGGCCGCAACAGTGCCTCTTGGTGCGTGGAGTGGTTCAATACCAAGGTCTCTGCCTGGCACAACAACGTGGAGAAAACCCTGCCCTCCACAAAGGCCTTGCGAGTGGGCGTGCTCCTCAACTGCGACCATGGCTTCGTCATCTTCTTCGCCGTGGCTGACAAGGTCCACATGTTGTATAAGTACAGGGTGGACTTTGCGGAAGCTCTGTACCCGGCCTTCTGGCTGTTCTCCACAGGTGCTACGCTCTCCCTCTGCTCCAAGTAG

Related Sequences

bmy_11959T0 Protein

Length: 556 aa      View alignments
>bmy_11959T0
MAELCPLAEELSCSICLEPFKGPVTTPCGHNFCGSCLDQTWAVQDPPYLCPQCRTGFQTRPQLHKNTVLCAVVEQFLQAEQARPEVPDDWMPPTRAAAPNPAGQVACDHCLQATAVKTCLVCMASFCQEHLRPHLDSPAFRDHPLQSPIRELMRRKCPQHNRLRDFFCPEHGECICHICVVEHKTCSPAPLSQASTDLENKLRHKLTVTYSQINGASRALEDVRARQQDVRKAAKLQGITTKPVYVPKVELNHELIKGVCQGTSELKNELKQYLKQPQDKKPEELIIPGGPGGHGLLHIPKPPRPVKKIPKEEKKPKKPPPTIALPSKLPSFGAPEHLVDLKQTGQEAEVKVPTVPPTPVSLKAKVLETFLAKSRPELLEYTVKVILDYNTAHNKVALSENYTVASVADASHNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMERQGPESRLGRNSASWCVEWFNTKVSAWHNNVEKTLPSTKALRVGVLLNCDHGFVIFFAVADKVHMLYKYRVDFAEALYPAFWLFSTGATLSLCSK*