Sequence detailsbmy_11959 (Coding sequence)

Part of scaffold_684 (SequenceType object (1))

For more information consult the page for scaffold_684 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM25ENSTTRG00000008104 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 25

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007665, Bottlenosed dolphin)

Protein Percentage 63.08%
cDNA percentage 72.93%
Ka/Ks Ratio 0.56389 (Ka = 0.2634, Ks = 0.4671)

TRIM25ENSBTAG00000009948 (Cow)

Gene Details

E3 ubiquitin/ISG15 ligase TRIM25

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000013121, Cow)

Protein Percentage 83.67%
cDNA percentage 87.24%
Ka/Ks Ratio 0.13633 (Ka = 0.079, Ks = 0.5796)

Additional orthologs identified in other species via the OPTIC pipeline.

TRIM25 (Human)   Trim25 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1668 bp    Location:67059..85038   Strand:+
Raw sequence 
>bmy_11959
ATGGCGGAGCTGTGCCCCCTGGCCGAGGAGCTGTCGTGCTCCATCTGCTTGGAGCCCTTCAAGGGGCCGGTCACCACGCCCTGCGGCCACAACTTTTGCGGGTCGTGCCTGGACCAGACGTGGGCCGTCCAGGACCCGCCGTACCTGTGCCCACAGTGCCGCACCGGCTTCCAGACGCGGCCACAGCTGCACAAGAACACGGTGTTGTGTGCGGTGGTGGAGCAGTTCCTGCAGGCCGAGCAGGCCCGTCCCGAGGTCCCCGACGACTGGATGCCGCCCACCCGGGCCGCCGCCCCCAACCCGGCCGGCCAGGTGGCTTGCGACCACTGCCTGCAGGCGACCGCCGTCAAGACGTGCCTGGTGTGCATGGCCTCCTTCTGCCAGGAGCACCTGCGGCCGCATCTCGACAGCCCCGCCTTTCGGGACCACCCGCTGCAGTCGCCCATCCGTGAGCTGATGCGCCGCAAGTGCCCCCAGCACAACCGGCTGCGGGACTTCTTCTGTCCTGAGCACGGCGAGTGCATCTGCCACATCTGCGTGGTGGAGCACAAGACCTGCTCGCCTGCGCCCCTGAGTCAGGCCAGCACTGACCTGGAGAACAAGTTGAGGCATAAACTGACTGTCACGTACAGTCAGATCAACGGGGCGTCGAGAGCACTGGAGGACGTGAGAGCCAGGCAGCAGGACGTGCGGAAAGCAGCAAAACTGCAAGGAATCACGACGAAGCCAGTCTACGTCCCCAAGGTGGAGCTGAATCACGAGCTGATAAAGGGTGTCTGTCAGGGCACCTCTGAGCTCAAAAATGAGCTGAAGCAGTACCTCAAACAGCCCCAGGACAAGAAGCCTGAAGAGCTCATCATCCCAGGGGGCCCTGGAGGACATGGCCTGCTGCACATTCCGAAACCCCCACGGCCTGTGAAGAAGATCCCAAAAGAAGAAAAGAAACCCAAGAAACCTCCCCCAACCATTGCCTTACCCAGCAAGCTTCCCTCCTTTGGAGCCCCAGAACATTTAGTGGATCTCAAGCAAACTGGCCAGGAGGCTGAGGTCAAAGTCCCCACCGTACCGCCGACCCCGGTGTCTCTCAAGGCCAAGGTGCTGGAGACCTTCCTAGCCAAGTCCAGGCCTGAGCTCCTGGAGTATACTGTGAAAGTCATCCTGGACTACAACACTGCCCACAACAAGGTGGCTCTGTCCGAGAACTACACCGTAGCTTCTGTGGCTGACGCGTCCCACAACTACCGGCCACATCCCCAGAGGTTCACGTACTGCTCTCAGGTGCTGGGCCTGCACTGCTACAAGAAGGGGATCCACTACTGGGAGGTGGAGCTGCAGAAGAACAACTTCTGTGGGGTGGGCATCTGCTACGGCAGCATGGAACGGCAGGGCCCCGAGAGCCGGCTCGGCCGCAACAGTGCCTCTTGGTGCGTGGAGTGGTTCAATACCAAGGTCTCTGCCTGGCACAACAACGTGGAGAAAACCCTGCCCTCCACAAAGGCCTTGCGAGTGGGCGTGCTCCTCAACTGCGACCATGGCTTCGTCATCTTCTTCGCCGTGGCTGACAAGGTCCACATGTTGTATAAGTACAGGGTGGACTTTGCGGAAGCTCTGTACCCGGCCTTCTGGCTGTTCTCCACAGGTGCTACGCTCTCCCTCTGCTCCAAGTAG

Related Sequences

bmy_11959T0 SequenceType object (3)

Length: 556 aa      View alignments
>bmy_11959T0
MAELCPLAEELSCSICLEPFKGPVTTPCGHNFCGSCLDQTWAVQDPPYLCPQCRTGFQTRPQLHKNTVLCAVVEQFLQAEQARPEVPDDWMPPTRAAAPNPAGQVACDHCLQATAVKTCLVCMASFCQEHLRPHLDSPAFRDHPLQSPIRELMRRKCPQHNRLRDFFCPEHGECICHICVVEHKTCSPAPLSQASTDLENKLRHKLTVTYSQINGASRALEDVRARQQDVRKAAKLQGITTKPVYVPKVELNHELIKGVCQGTSELKNELKQYLKQPQDKKPEELIIPGGPGGHGLLHIPKPPRPVKKIPKEEKKPKKPPPTIALPSKLPSFGAPEHLVDLKQTGQEAEVKVPTVPPTPVSLKAKVLETFLAKSRPELLEYTVKVILDYNTAHNKVALSENYTVASVADASHNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMERQGPESRLGRNSASWCVEWFNTKVSAWHNNVEKTLPSTKALRVGVLLNCDHGFVIFFAVADKVHMLYKYRVDFAEALYPAFWLFSTGATLSLCSK*