Part of scaffold_1256 (Scaffold)

For more information consult the page for scaffold_1256 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PVRL1 ENSTTRG00000005068 (Bottlenosed dolphin)

Gene Details

poliovirus receptor-related 1 (herpesvirus entry mediator C)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004838, Bottlenosed dolphin)

Protein Percentage 44.57%
cDNA percentage 45.22%
Ka/Ks Ratio 0.20067 (Ka = 0.0696, Ks = 0.347)

PVRL1 ENSBTAG00000015939 (Cow)

Gene Details

poliovirus receptor-related protein 1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000053311, Cow)

Protein Percentage 95.71%
cDNA percentage 95.03%
Ka/Ks Ratio 0.05907 (Ka = 0.0172, Ks = 0.2904)

PVRL1  (Minke Whale)

Gene Details

poliovirus receptor-related 1 (herpesvirus entry mediator C)

External Links

Gene match (Identifier: BACU017351, Minke Whale)

Protein Percentage 98.12%
cDNA percentage 98.74%
Ka/Ks Ratio 0.1779 (Ka = 0.0076, Ks = 0.0425)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1557 bp    Location:251243..236056   Strand:-
>bmy_16073
ATGGCACGTTCTGAGGAGGGGTCCAGTCTGACCTGGTTGGAAGGCCTCATGTATGGAGAGACGTGGACAGAAAGGCAGGACCCAGGCGCCCACACCCAGGTGGTCCAGGTGAACGACTCCATGTACGGTTTCATCGGCACGGACGTGGTGCTGCACTGCAGCTTCGCCAACCCGCTGCCCGGTGTGAAGATCACCCAGGTCACGTGGCAGAAGGCCAACAATGGCTCCAAGCAGAACGTGGCCATCTACAACCCGGCCATGGGCGTCTCGGTGCTGGCGCCCTACCGCGAGCGCGTGGAGTTCCTACGGCCCTCCTTCACAGATGGCACCATTCGCCTCTCCCGCCTGGAGCTGGAGGATGAGGGCGTCTACATCTGCGAGTTTGCCACCTTCCCTGCCGGCAATCGAGAGAGCCAGCTCAATCTCACTGTGATGGCCAAACCCACCAACTGGATAGAGGGCGCCCAGGCAGTGCTTCGAGCCAGGAAGGGGCAGGATGACAAGGTCCTGGTGGCCACCTGCACCTCGGCCAATGGGAAGCCTCCCAGTGTGGTGTCCTGGGAAACGCGGCTGAAGGGTGAGGCGGAGTACCAGGAGATCCGGAACCCCAACGGCACGGTGACCGTCATCAGCCGCTACCGCCTGGTGCCCAGCCGGGAAGCCCACCAGCAATCCCTGGCCTGCATCGTCAACTACCACATGGACCGCTTCCGGGAAAGCCTCACCCTCAATGTGCAGTACGAGCCCGAGGTGACCATCGAGGGGTTTGATGGGAACTGGTACCTACAGCGGATGGATGTGAAGCTCAAGTGCAAAGCTGATGCCAACCCCCCAGCCACCGAGTACCACTGGACCACGCTGAATGGCTCCCTCCCCAAGGGTGTGGAGGCCCAGAACAGAACTCTCTTCTTCAGGGGACCTATCAGCTACAGCCTGGCAGGAACCTACGTCTGTGAGGCCACCAACCCCATCGGCACCCGCTCAGGCCAGGTGGAGGTCAATATCACAGAGTTCCCCTACACCCCGTCTCCTCGCGCACCCGGGCGGCGCGCCGGGCCGGTGCCCACGGCCATCATCGGGGGCGTGGTGGGGAGCATTCTGCTGGTGCTGACCGTGGTCGGCGGGATCGTGGTGGCCCTGCGCCGGCGCCGGCACACCTTCAAGGGCGACTACAGCACCAAGAAGCACGTGTACGGCAATGGCTACAGCAAGGCCGGCATCCCCCAGCACCACCCGCCCATGGCCCAGAACCTTCAGTACCCTGAGGACTCGGACGACGAGAAGAAAGCCGGGCCCCTGGGCGGCAGCAGCTACGAGGAGGAAGAGGAGGAGGAGGGCGGAGGCGGCGAGCGCAAGGTGGGCGGCCCTCACCCCAAGTACGACGAGGACGCCAAGCGGCCCTACTTCACGGTGGATGAGGCGGAGGCCCGTCAGGACGGCTGCTACGGGGACCGGACTCTGGGCTACCAGTACGACCCTGACCAGCTGGACTTGGCCGAAAACATGGTTTCTCAGAACGACGGGTCTTTGATTTCCAAGAAGGAGTGGTACGTGTAG

Related Sequences

bmy_16073T0 Protein

Length: 519 aa      View alignments
>bmy_16073T0
MARSEEGSSLTWLEGLMYGETWTERQDPGAHTQVVQVNDSMYGFIGTDVVLHCSFANPLPGVKITQVTWQKANNGSKQNVAIYNPAMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPAGNRESQLNLTVMAKPTNWIEGAQAVLRARKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFRESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLKCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPISYSLAGTYVCEATNPIGTRSGQVEVNITEFPYTPSPRAPGRRAGPVPTAIIGGVVGSILLVLTVVGGIVVALRRRRHTFKGDYSTKKHVYGNGYSKAGIPQHHPPMAQNLQYPEDSDDEKKAGPLGGSSYEEEEEEEGGGGERKVGGPHPKYDEDAKRPYFTVDEAEARQDGCYGDRTLGYQYDPDQLDLAENMVSQNDGSLISKKEWYV*