Part of scaffold_2672 (Scaffold)

For more information consult the page for scaffold_2672 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUP133 ENSTTRG00000009601 (Bottlenosed dolphin)

Gene Details

nucleoporin 133kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009155, Bottlenosed dolphin)

Protein Percentage 92.03%
cDNA percentage 92.47%
Ka/Ks Ratio 0.29038 (Ka = 0.0185, Ks = 0.0635)

BT.70137 ENSBTAG00000004965 (Cow)

Gene Details

nuclear pore complex protein Nup133

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006535, Cow)

Protein Percentage 93.34%
cDNA percentage 93.57%
Ka/Ks Ratio 0.23154 (Ka = 0.0351, Ks = 0.1515)

NUP133  (Minke Whale)

Gene Details

nucleoporin 133kDa

External Links

Gene match (Identifier: BACU009566, Minke Whale)

Protein Percentage 88.97%
cDNA percentage 91.42%
Ka/Ks Ratio 0.66893 (Ka = 0.0817, Ks = 0.1221)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3726 bp    Location:183657..131848   Strand:-
>bmy_20897
ATGTTCCCGGCCGTCTCCTCTCCGCGGACCCCGGGGCCCGGGGCCCGAAGGGGCCCGCTGGGCGGAGTCGGGCCGGGCTCCACGCCCCGGGCGACCAGCAGGAAGGGTCTGGCCCTGGGGTCTTTGGTCAGTTCCCCGGTGCTCTTCTCGCCGGCCGGCCGTCGTAGCTCGCTGAGCTCGCGAGGAACACCTACACGAATATTCCCACACCACTCCATAACTGAGTCTGTGAACTATGATGTGAAAACATTTGGATCTTCTCTCCCTGTTAAAGTCATGGAAGCCTTAACATTGGCTGAAGTTGACGATCAGCTGACTGTTCACATAGATGAAGGTGGATGGGCTTGTCTGGTCTGCAAAGAGAAACTCATTATYTGGAAGATTGCTCTGTCACCTATTACCAAGTTATCTGTTTGCAAAGAACTTCAGCTACCACCTACTGATTTCCACTGGAGTGCCAACTTGGTGGCTCTCTCTTACTCTGCTACCTCAGGTGAAGCACATTCTACTCAGGCTGTTGCTGTCATGGTTGCCACCAGAGAAGGATCCATCCGCTATTGGCCAAGCCTTGCAAGTGAAGACACCTACACAGAGACTTCCGTAGATCTGGGAGGTGATAAGACTTACAGTTTCCTAACAACAGTGCAGGGAGGAAGTTTTATTTTATCCTCATCGGGAGGCCAACTGATTCGCCTGATACCCGAAAGTGTAGGAAAAATTCATCAGCATATCCTGCCTCAAGGGCAAGGTGTGCTTTCAGGAATTGGTCGGAAGGTTTCTTCTCTTTTGGGAATTTTATCTCCTAGTAGTGATCTCATACTTTCAAGTGTCCTTTGGGATAGAGAGCGATCAAGCTTTTACAGCTTGACAAGTTCAAACATCAGTAAATGGGAATTAGATGATTCTTCAGAAAAACAAGCACATAGTTGGGATATAAATAGAGTCCTGAAGGAAAACATTATTGATGCTATCTGGGGATCTGAAAGTAACTATGAAGCTATTAAAGAAGGGGTCAACATTCGGTATTTGGATTTGAAGCAAAACTGCGATGGGCTCCTGATTTTGGCAGCAGCGTGGCACCTGGCGGACAAGCCCTGTCTCGTCTATTACTCGCTGGTAACAGTAGAAGATAACGGCTACCAAATGTCAGATGCAGTGACTGTGGAAGTCACTCAGTATAACCCACCTTTTCAGTCTGAAGACTTGATTATATGTCAGTTGACGGTCCCAAACTTTTCAAACCAGACTGCCTATCTGTATACTGAAAGTGCCGTCTACGTGTGCTCCACAGGAACTGGGAAGTTTTCTCTTCCTCAGGAGAAAATCGCCTTCAATACACAAGGAGATAGTATTTTAGGAGCTGGTTCCTGTGGGGGCGTTCCTATCCTTTTTTCTAGAAACAGTGGATTGGTGTCGATTACTTCAAGGGAAAATGTGTCCGTATTGGTAGAAGACCTTGAAGATTCCCTGGCATCTTCAGTTGCTGGACCAGGCAATGAGAGTGTGGTTTTTGACACCTCTACCAAGAATGAGACTATTGCCCGGGAAGATAAAACCAAATTGCTAAAAGCTGCTTTTCTGCAATACTGCAGAAAAGATTTCAGTCGTGCTCAGACGCTGGTTGACGAGCTGTTCTCCTCTCACTCTGCCTCGGACTCCGACTGTGAACTAGACAGAGCTGTTGCCCAGACCAGCGTGGACCTGGCGGACGACTACCCTGCTTCTGACCCGCGGTGGGCCGAGTCCGTGCCCGAGGAAGCACCTGGGTTCAGCAATACATCTTTGATTATTCTCCACCAGCTSGAAGACAAGATGAAAGCCCATTCTTTCCTTATGGACTTCATTCACCAAGTCGGCTTGTTTGGACGTCTCGGCACTTTTCCAGTGAGAGGGCTGCCGATGGCCACACGGCTGCTGCTCTGTGAACACGCCGAGAAGCTGGCCGCCGCCATCGTCCTCAAGAACCACCACTCGAGGCTTTCCGACCTTGTGAACACAGCGATACTGATGGCTTTAAACAAGAGGGACTGCGACATCCCGTGCAACCTGACCCCCGCAGACGTCTTCTTCAGAGAGGTGTCCCAGGTAGATACCATCTGTGAGTGTTTACTGGAGCACGAGGAGCAAGTCTTGAAGGACACGTCCTTGGAATCAGTTGAATGGGCGGAGGTGGTGATCAGTGTGAACAGTATTCTCAAGGACATGCTGCAAGCTGCTAGTCACTATCGACAAAATAGGAGCTCCTTGTACAGAAGAGAAGAGCCACTAGAAAAAGAACCTGAGTATATTCCATGGACAGCAACGAGTGGTCCTGCCGGCATCCGAACAGCAATAGTGCGCCAGCATGGGATTGTCCTGAAAATGGTTTATCCTCAGGCAGACAGCAACCTCCGAAACATTCTGACAGAGCAGCTGGTAGCACTGATTGATTGCTTCCTGGATGGTTATGTTTCTCAGCTCAAGTCTGTGGACAGATCCAGTGATCAAGAAAGATATAACAATCTGGAAATGGAATACCTGCAGAAAAGATCAGATCTCTTATTTCCGCTTCCGTGTGGAGACTGCTTACCATCTCAGACCTTCATAGGAACAGCTAGACCGCAGGGTAGAGCAGACAAGGGTCGTTCCAGGGTCGGGAGAGGTGGTACGGCTCTTCAGCGGAGGACACGAGACGTCACACTAGGCCAGTACCCATGGGCTGCTTCATTAGCAGAAAAATACTGTGACTTTGATATCTTAGTACAAATGTGTGAGCAGACTGACAACCAGACCAGACTGCAGCGCTACATGACACAGTTTGCTGATCAGGTAACGAACCCTGGGGGTGTAGGCAGTGGATCCTTTCGCATTAATTTTTCAGACTTTCTCTTCCGTTGGTATCTGGAGAAAGGAAAGCGAGGCAAATTATTATCTCAGCCTATTTCTCAGCATGGACAGTTGGCCAATTTTTTGCAAGCTCATGAACATCTCAGCTGGTTACACGAAATTAATAGCCAAGAATTAGAAAAGGCTCATGCAACACTTCTAGGTTTGGCAAATATGGAAACTCGTTACTTTGCAAAGAAAAAAACCCTTCTTGGCTTGAGTAAATTGGCTGCATTAGCTTCAGGCTTTTCAGACGATACACTGCAAGGAAAAATTGAAGAAATGGCTGAGCAGGAGCGCTTTCTGCTGCACCAGGAGACCCTGCCTGAACAGCTGCTGGGCGAGAAACAGCTGAGTCTCGGTGCAATGCCGGTACTGACTGCACCGCAGCTCATTGGCAAAGCAGTTCAAATGCAAAAGCGGTGTCATAGGATCACCTTGAATTGCTCTAATTATGTTACTAAGAAAGCAGACAATTCAAAAACTTCACTGTATATCTGTGAAGAAAACAGAAGAGCTAACGAGTATGATTTCAAGAAAGCTTTGGACTTGCTTGAATATATTGATGAGGAGGAAGATATAAATATAAATGATCTAAAACTGGAAATCCTTTGCAAAGCTCTTCAGAGAGATAACTGGTCCAGTTCAGATGGTAAAGATGATCCAATTGAAGTATCTAAAGACAGTATATTTGTGAAAATCTTACAGAAACTTTTAAAAGATGGCATTCAGCTCAGTGAGTACCTGCCAGAGGTGAAGGACCTGCTGCAAGCAGACCAGTTGGGAAGTTTGAAGTCCAATCCTTACTTTGAGTTTGTTTTGAAAGCTAATTATGAATACTATGTCCAGGGACAAATGTGA

Related Sequences

bmy_20897T0 Protein

Length: 1242 aa      View alignments
>bmy_20897T0
MFPAVSSPRTPGPGARRGPLGGVGPGSTPRATSRKGLALGSLVSSPVLFSPAGRRSSLSSRGTPTRIFPHHSITESVNYDVKTFGSSLPVKVMEALTLAEVDDQLTVHIDEGGWACLVCKEKLIIWKIALSPITKLSVCKELQLPPTDFHWSANLVALSYSATSGEAHSTQAVAVMVATREGSIRYWPSLASEDTYTETSVDLGGDKTYSFLTTVQGGSFILSSSGGQLIRLIPESVGKIHQHILPQGQGVLSGIGRKVSSLLGILSPSSDLILSSVLWDRERSSFYSLTSSNISKWELDDSSEKQAHSWDINRVLKENIIDAIWGSESNYEAIKEGVNIRYLDLKQNCDGLLILAAAWHLADKPCLVYYSLVTVEDNGYQMSDAVTVEVTQYNPPFQSEDLIICQLTVPNFSNQTAYLYTESAVYVCSTGTGKFSLPQEKIAFNTQGDSILGAGSCGGVPILFSRNSGLVSITSRENVSVLVEDLEDSLASSVAGPGNESVVFDTSTKNETIAREDKTKLLKAAFLQYCRKDFSRAQTLVDELFSSHSASDSDCELDRAVAQTSVDLADDYPASDPRWAESVPEEAPGFSNTSLIILHQLEDKMKAHSFLMDFIHQVGLFGRLGTFPVRGLPMATRLLLCEHAEKLAAAIVLKNHHSRLSDLVNTAILMALNKRDCDIPCNLTPADVFFREVSQVDTICECLLEHEEQVLKDTSLESVEWAEVVISVNSILKDMLQAASHYRQNRSSLYRREEPLEKEPEYIPWTATSGPAGIRTAIVRQHGIVLKMVYPQADSNLRNILTEQLVALIDCFLDGYVSQLKSVDRSSDQERYNNLEMEYLQKRSDLLFPLPCGDCLPSQTFIGTARPQGRADKGRSRVGRGGTALQRRTRDVTLGQYPWAASLAEKYCDFDILVQMCEQTDNQTRLQRYMTQFADQVTNPGGVGSGSFRINFSDFLFRWYLEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKAHATLLGLANMETRYFAKKKTLLGLSKLAALASGFSDDTLQGKIEEMAEQERFLLHQETLPEQLLGEKQLSLGAMPVLTAPQLIGKAVQMQKRCHRITLNCSNYVTKKADNSKTSLYICEENRRANEYDFKKALDLLEYIDEEEDININDLKLEILCKALQRDNWSSSDGKDDPIEVSKDSIFVKILQKLLKDGIQLSEYLPEVKDLLQADQLGSLKSNPYFEFVLKANYEYYVQGQM*