Sequence detailsbmy_21417 (Coding sequence)

Part of scaffold_2940 (SequenceType object (1))

For more information consult the page for scaffold_2940 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PALB2ENSTTRG00000005260 (Bottlenosed dolphin)

Gene Details

partner and localizer of BRCA2

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000004957, Bottlenosed dolphin)

Protein Percentage 95.1%
cDNA percentage 96.94%
Ka/Ks Ratio 0.49064 (Ka = 0.0248, Ks = 0.0506)

PALB2ENSBTAG00000006405 (Cow)

Gene Details

partner and localizer of BRCA2

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000008398, Cow)

Protein Percentage 82.07%
cDNA percentage 89.13%
Ka/Ks Ratio 0.51448 (Ka = 0.0978, Ks = 0.1901)

PALB2 (Minke Whale)

Gene Details

partner and localizer of BRCA2

External Links

Gene match (Identifier: BACU011862, Minke Whale)

Protein Percentage 97.48%
cDNA percentage 98.53%
Ka/Ks Ratio 0.51657 (Ka = 0.012, Ks = 0.0232)

Additional orthologs identified in other species via the OPTIC pipeline.

PALB2 (Human)   Palb2 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3468 bp    Location:66730..43439   Strand:-
Raw sequence 
>bmy_21417
ATGCTCTTTTTGTTGGCCGCCGGCCAGATGGAAGAGCCTCCTGGGAAGCCCCTCAGCTGTGAGGAGAAGGAAAAGTTGAAGGAAAAATTAGCATTCTTGAAAAGGGAATACAGCAAGACACTGGCCCGCCTTCAGCGTGCCCAGAGAGCTGAGAAGTTTAAGAATTCCATTAAGAGAACAGTAGAAGGACAAGATTCCTCGCTCCAGCAGGAAGTTTCAACACAGCTAACCCACACAGATCCTAAAAATAAAGTATCTCCTTGTGACACGTTACAAATCAACACCCACGTCGATAAAGAAACTGGAGAAAAGACACCTATCACACTTGACCTTGAGCCTGAGTCCTTTAGCCCTGGACGAGTCCCAGCAGAAGGATCACGCACACAAAGATCAGATGATATCCAAGAACATTTTCCCTACAGGGTCAGTGGCCCTGATGGTAAGAAAAGGGAGAGTAAGCTGCTAGGGAGAAGAAGGAAACAGGAGAGAACATTTATTTCACAGGAGAGAGAGTCTTTCTTTGACGTTGATTCGCTCATACTTTCTGGAAAAAGACTGAAGGAACAGGAAGAAATCAATAGAGGAAATCCTAAGACACCTGTAACTGAGATAAGAACTTACCTGTCAAGTCCTGAGTTTGACATTCCCGATTCTCCAGCACCAGTTACAGGAAATAATGTAGGGAGTGTATTAATTCTACCAAACACCAAACCACAGAGAGATGTTGATGCACTCTTAAGAGGAAATAATTTCCCCAGGGTGACTACTCTTCCTTTGCATGCTCCATCAGTCAGCAGTAGTGGTCAGCACCTCGAGCATAAGCCTCCTAAAAGTAACTGTGAACTTACTACTCACAGTTTAAAAAACATTAGCCCTGCTTCGCCTGTAAACTTAGAGACACAAAACAAAAAAATGACTGTCTTTACAGATAACCCAGAGGTAAACAAAAGTATAACGGCAAGTGGCCAGCCGCCTAGAAGTCCTAACTTGGAGGCAGATAATTCATGTTCTATAAATGAACTCACCTACGATAACTTAGTGGCAAATGAAAACCAAAACTTAAAAGAACAAAATCACACAGAGATGTCTTTTAAATCTCCCAATAATGCTCTTGGTGGTAGAAATGAAAGTCCTCTGGAAAAAGAAGTTCTAAGTCAATCTAAGAGTCTTAGCCTAGAAGTACTTTCTCCTGCTTCTACAGAAAATCAAACACATTCTTGCACAGTGCTTGAAGGCCTTCTATTTCCTGCAGAATATTATGTTAGAACAACACGACGCATGTCAAATTGCCAGAGGAAAGTAGCACTGGAGGCTGTAATACAAAGTCATTTGGGTGTCAGAAAAAAGGGGTTTAAAAATAAAAATAAGGAATCTGCTAATAAGTTAAACGTTTCCAGTGAAGAAACTAACCAAAGTGAAATTAAGATGTCGGACACGTATGCAGAGCAACCAAGTTCAAAAAGTCCTCAGAAACTTCTCTCGTTAACTGAAGTCAACTCTCCCGCTGGCCCCACTAAAGATGACTTTTCTAGGAAGGCGGTTACCCAGCCATCTGGTAGAAAACACAAAGGAAGAAGAAAGTCAGTCTGCACCCCTCTGTTAGATCACCATGAACTACTTTTGCCAACTTCTGGCACATCAGGTGTTAATAGGTCCAAGGAAGAAGTTGCCTTGCACAAAGATCAGAATGAAAAAGCAATTATTCATGAGAAGGAAGGTCATTGTCAAAAAGAGGACTCCCTTTCTTACAGTAATTACGTGTATTTATCTTTGGATGATGATGCTTTCAGTTCTTCATTTCGTAAGAATGAAATGCTAAATTTAAAGCATCTGTCGCCTTTTCTCAAAATCACAGACTTTCAGTTACCTGATGAAGACTTTGGGCCTCTTAAGCTTGAAAAACTGAAGTCTTGCTCAGAAAAGCTGATGGAGCCTTTTGGATCAAAAACGTATGGAGAGGGACATCTTAAAGGGGGAAATTGTGTTGCTGTGGAGGAACTGACCCCTAAACAAATCACTATAGAAAAGGAGGATGGGAAAGAGGAACTGATCATCCTGCCAGGAAAGGCACATCCTAAAATGCCAAGCAAAAAAAGCCAGCCTCAGGAGAAGGGCCTTTCTTCATCCATTTTACTTTTCACTCCTGTAAATACTGTTGCATCTGATGATAATGACAGACCGACAGCAGACCTGTGCTCACCCGCTTTCCCCGTCTTAGGCTCTACTCCAGCTTTTGGCTCCCAAGCCCATGGAGAAAAGATGTCTGCAGAGGTTGTTGGACAAGCTTGCTCTACACCCCAGCTTTCTCACTTAAAAGCCACAGTCAGCCTTGCTAGTGATCATAAACAATTTTGGAGCAGCCCACCAAAATTAGATAGCAGCCTGCATGTGGCAGGAAGGGAAGGACAGCCTTCCCGTGACTGTGACTCTGGTCCCCAAGCAACACCTCTACCCATCGAGTCATCAACCTACAAAGAAAATCAGCTCCGTGGAAACACGTGCCAGGAATCACGGAAACATTCCACTGAACAGACTGAAATAGCAGACGTTCCTGCTTGTGATAGCTTAAACCCAGGCACCCTACAATTGGTTTCAAAGTTAAAGAATCCTTCAGGTTCCTGTTCTGTGGATGTGAGTGCCATGTGGTGGGAAATAGCTGGTTTCAAAGAGCGGTGTATCATAACTGCTTGTGAATACGTAGTTTCTCTTTGGAAGCCTCTGGATACTTGGCAGTGGGAAAAAATTTATTCCTGGCACTTCGCAGAGGTCCCAGTATTACAGATAGTTCTAGTGCCTGATGTTTGTAATCTTGTGTGTGTGGCTTTGGGAAATTTGGAAATCAGAGAAATCAGGGCACTACTTTGTTCTCCTGATGGTAAAAGTGAAAAGCAAGTGCTCCTGAGTTCTGGAAATATAAAAGCTGTGCTTGGCCTGACAAAGAGGAGGCTAGTCAGTAGCAGTGGGACCCTTTGTGATCAACAAGTAGAAATCATGACGTTTGCAGAAGATGGAGGGAATTTAAAAACTGGTCAACTCCTGAAAAAGATGCACATTGGTGATTCCTACCAAGCTTCAGTCTGTCACAAAGCTTACTCTGAAATGGGGCTCCTGTTTGTTGTTCTGAGTCACCCTTGTGCCAAAGAGAGCAAGTTGTTGGGAAGCCCTGTGTTTCAGCTGATTGTGATTAACCCAAAGACGACCCTGAGTGTGGGTGTGATGCTCTACTGCCTTCCTCAAGGGCAGGCTGGAAGGCAAGTGTTCCTGGAAGGTGACGTGAAAGATCATTTTGCAGCAGCAGTATTAACTTCTGGAACCATTGCCATTTGGGACTTACTCCTAGGTCATTGCACTGCTCTCCTTCCACCTATCTCTGACCAGAACTGGTCTTTTGTTAAATGGTCAGGTGCAGATTCTCATTTGCTGGCTGGACAAAAAGATGGAAATATATTTGTATACCGCTACTACTAA

Related Sequences

bmy_21417T0 SequenceType object (3)

Length: 1156 aa      View alignments
>bmy_21417T0
MLFLLAAGQMEEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKFKNSIKRTVEGQDSSLQQEVSTQLTHTDPKNKVSPCDTLQINTHVDKETGEKTPITLDLEPESFSPGRVPAEGSRTQRSDDIQEHFPYRVSGPDGKKRESKLLGRRRKQERTFISQERESFFDVDSLILSGKRLKEQEEINRGNPKTPVTEIRTYLSSPEFDIPDSPAPVTGNNVGSVLILPNTKPQRDVDALLRGNNFPRVTTLPLHAPSVSSSGQHLEHKPPKSNCELTTHSLKNISPASPVNLETQNKKMTVFTDNPEVNKSITASGQPPRSPNLEADNSCSINELTYDNLVANENQNLKEQNHTEMSFKSPNNALGGRNESPLEKEVLSQSKSLSLEVLSPASTENQTHSCTVLEGLLFPAEYYVRTTRRMSNCQRKVALEAVIQSHLGVRKKGFKNKNKESANKLNVSSEETNQSEIKMSDTYAEQPSSKSPQKLLSLTEVNSPAGPTKDDFSRKAVTQPSGRKHKGRRKSVCTPLLDHHELLLPTSGTSGVNRSKEEVALHKDQNEKAIIHEKEGHCQKEDSLSYSNYVYLSLDDDAFSSSFRKNEMLNLKHLSPFLKITDFQLPDEDFGPLKLEKLKSCSEKLMEPFGSKTYGEGHLKGGNCVAVEELTPKQITIEKEDGKEELIILPGKAHPKMPSKKSQPQEKGLSSSILLFTPVNTVASDDNDRPTADLCSPAFPVLGSTPAFGSQAHGEKMSAEVVGQACSTPQLSHLKATVSLASDHKQFWSSPPKLDSSLHVAGREGQPSRDCDSGPQATPLPIESSTYKENQLRGNTCQESRKHSTEQTEIADVPACDSLNPGTLQLVSKLKNPSGSCSVDVSAMWWEIAGFKERCIITACEYVVSLWKPLDTWQWEKIYSWHFAEVPVLQIVLVPDVCNLVCVALGNLEIREIRALLCSPDGKSEKQVLLSSGNIKAVLGLTKRRLVSSSGTLCDQQVEIMTFAEDGGNLKTGQLLKKMHIGDSYQASVCHKAYSEMGLLFVVLSHPCAKESKLLGSPVFQLIVINPKTTLSVGVMLYCLPQGQAGRQVFLEGDVKDHFAAAVLTSGTIAIWDLLLGHCTALLPPISDQNWSFVKWSGADSHLLAGQKDGNIFVYRYY*